Protein

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Genbank accession
WVX90382.1 [GenBank]
Protein name
tail protein
RBP type
TF
Evidence RBPdetect
Probability 0,81
Protein sequence
MAWQNSVEKAMLGSTIVQGGYIKTELLNASAIVSNGGGATSAELNNAINSIIIGGRNLARNTEFKNGGEHWSKGYPQAEFLPNERAVKITSIEGQIYNQIDQNIKCEKNTEYTISAFVKGMGSAFFYALEMKENGTYTAVYSDNYRVFPVNSEYKYVKFTIRTQSDTAYFIFILRSFRNNTVWFKDVKVEKGNKATDWSPNPQDIETLFANLQQGISNMQTSLSDVKNKTDNFTSIQGGLMMANLMSVGSNQANQNAFISGITDEGAMSVRFGAGSNYANKNNAPFRVLDNGKVYGSDMEITGGKIARFNISGNTLSGQGIADPNDYLEIKSSGSILSYKKSLSSGRESYALINNDDSILNGNKNNILRLWGRDVNNYTPYNALSIRADGQYATALNIESGDIRVGGEVGYTGSVFLGNRLVYIKNGIIIRV
Physico‐chemical
properties
protein length:432 AA
molecular weight: 47411,48870 Da
isoelectric point:8,59462
aromaticity:0,10185
hydropathy:-0,36551

Domains

Domains [InterPro]
DC_1746
STR
3–297
DC_1746
IPR008979
STR
53–192
IPR008979
G3DSA:2.60.120.260
STR
56–199
G3DSA:2.60.120.260
WVX90382.1
1 432
Architecture
STR
STR 3-297 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Riemerella phage vB_RanS_GDF21
[NCBI] 		3113642 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Riemerella anatipestifer
[NCBI] 		34085 cellular organisms > Bacteria > Pseudomonadati > FCB group > Bacteroidota/Chlorobiota group > Bacteroidota

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WVX90382.1 [NCBI]
Genbank nucleotide accession
PP067979 [NCBI]
CDS location
range 10 -> 1308
strand +
CDS
ATGGCGTGGCAGAACTCGGTAGAAAAAGCGATGTTGGGTAGTACGATAGTACAAGGGGGGTATATCAAAACAGAACTCTTAAACGCTTCGGCGATAGTGAGTAACGGTGGAGGAGCAACTTCGGCAGAATTAAATAATGCCATCAATAGTATCATTATCGGGGGTCGAAACCTAGCTCGCAATACTGAATTTAAAAACGGTGGAGAACATTGGAGCAAAGGGTATCCACAAGCAGAGTTTCTACCTAATGAAAGAGCAGTTAAGATAACCTCGATAGAAGGACAAATTTATAACCAAATAGACCAAAATATAAAATGTGAGAAAAACACAGAATATACAATATCAGCCTTTGTTAAAGGTATGGGTTCAGCTTTTTTCTACGCATTAGAAATGAAAGAAAATGGTACTTATACGGCTGTTTATTCTGATAATTACAGAGTATTTCCTGTAAATTCAGAATACAAATATGTAAAATTTACAATAAGGACACAGTCTGACACTGCTTATTTCATCTTTATACTAAGATCATTTAGGAACAACACAGTTTGGTTTAAAGATGTAAAAGTGGAAAAAGGCAACAAAGCGACCGATTGGTCGCCCAATCCACAGGATATAGAAACCCTATTTGCCAACCTTCAACAAGGGATAAGCAATATGCAGACTTCGTTATCTGATGTAAAGAATAAGACCGACAACTTCACTTCTATTCAAGGCGGATTGATGATGGCTAACTTGATGTCAGTCGGAAGCAACCAAGCCAATCAAAACGCTTTTATTAGTGGAATAACAGACGAGGGAGCAATGAGTGTGAGATTTGGAGCAGGGTCTAACTATGCAAATAAAAATAATGCTCCGTTTAGGGTACTGGATAATGGGAAAGTTTATGGCTCTGATATGGAAATTACGGGTGGTAAAATAGCAAGGTTCAATATTAGCGGAAATACACTTTCGGGGCAAGGAATAGCAGACCCAAACGACTATTTAGAAATAAAGTCATCTGGAAGCATACTTTCATATAAAAAAAGTCTTTCGTCTGGGAGAGAAAGCTATGCTCTCATCAATAATGATGATAGTATTTTAAACGGAAATAAAAACAATATACTTCGGCTCTGGGGGCGTGATGTGAACAATTATACGCCCTACAACGCCCTATCTATAAGGGCTGACGGACAGTATGCTACTGCCTTAAATATAGAATCGGGAGATATTCGTGTGGGTGGAGAGGTAGGATATACAGGTTCGGTCTTTTTAGGAAATAGACTAGTCTATATAAAAAATGGAATAATCATAAGAGTATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
71081f7484d68a6fa0e8e9c00613ddf6c25852e717e2ab7c1ef757c8248a7503
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7369
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization and genome analysis of phage vB_RanS_GDF21 against Riemerella anatipestifer Liu,C., Zhao,Y., Cao,S., Zhu,X. and Li,Y. 2012-06-15 — GenBank