Protein

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Genbank accession
QPZ53363.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,77
Protein sequence
MATVNLGSIKFNWQGAYAGGTAYAVDDVVSYNGTSYVCILASTGNLPTNATYWNVMAEGGDVATTLTTQGDILYRDGSGLQRLGAGTSGQVLQTGGTGANPSWTDTSGGVLQCKYAQQGGTEQWTSNNVMIGPTVTITPSSASNKIVIMSSGMLSGSTSITGSLGLRRATGTSVTNSGTQIFGGNSAGSRSRALQFGGASSDTWFGNNFSFQVLDAPNTTSEISYRLCSLGSDVGPTMYLGRTGRDSDNIEHPRTSTHIMAMEISSTIL
Physico‐chemical
properties
protein length:269 AA
molecular weight: 27859,44390 Da
isoelectric point:5,25700
aromaticity:0,07435
hydropathy:-0,15836

Domains

Domains [InterPro]
DC_0393
STR
1–269
DC_0393
G3DSA:2.10.10.20
ATT
15–57
G3DSA:2.10.10.20
QPZ53363.1
1 269
Architecture
STR
ATT
STR
STR 1-14 | ATT 15-57 | STR 58-269
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QPZ53363.1
1 269
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,8720
Central domain 11 208 199 0,0056
C-terminal 209 269 60 0,9995
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-208
C-terminal
209-269

Taxonomy

  Name Taxonomy ID Lineage
Phage Pelagibacter phage HTVC024P
[NCBI] 		2796518 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Candidadtus Pelagibacter sp. HTCC1062
[NCBI] 		198252 Pseudomonadota > Alphaproteobacteria > Candidatus Pelagibacterales > Candidatus Pelagibacteraceae > Candidatus Pelagibacter >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QPZ53363.1 [NCBI]
Genbank nucleotide accession
MW273920.1 [NCBI]
CDS location
range 15217 -> 16026
strand -
CDS
ATGGCGACAGTAAATTTAGGTTCTATAAAATTCAATTGGCAAGGTGCTTATGCAGGTGGTACTGCTTATGCAGTAGATGATGTTGTATCATACAATGGTACATCATATGTTTGTATTTTAGCTTCAACTGGTAATCTTCCAACTAACGCTACTTACTGGAATGTAATGGCAGAAGGTGGAGATGTTGCAACAACATTAACTACTCAAGGAGATATTTTATATCGTGATGGCTCTGGTCTACAAAGACTTGGTGCAGGAACAAGTGGTCAAGTTTTGCAAACTGGTGGTACTGGTGCAAATCCAAGTTGGACAGATACTAGTGGTGGAGTTTTACAATGTAAATATGCTCAACAAGGTGGTACTGAACAATGGACAAGTAATAATGTAATGATTGGTCCAACTGTAACAATAACACCATCAAGTGCATCAAATAAAATTGTAATTATGAGTAGTGGTATGCTTAGTGGAAGTACATCTATTACTGGTTCTTTAGGTTTAAGGAGAGCAACTGGAACTTCTGTTACAAATAGTGGAACTCAAATTTTTGGTGGAAATAGTGCAGGAAGTAGAAGTAGAGCATTACAATTTGGTGGTGCAAGTTCTGACACTTGGTTTGGTAATAACTTTTCTTTTCAAGTTTTGGATGCTCCAAATACAACTTCTGAAATTTCTTACCGATTATGTTCTTTAGGAAGTGATGTAGGACCTACTATGTATCTAGGAAGAACTGGTAGAGATTCTGATAATATAGAACATCCAAGAACAAGTACACACATAATGGCTATGGAAATATCCAGTACAATTTTATAG

Genome Context

Genome Context

Tertiary structure

PDB ID
d2894d82e1ef16606030d742525f96e2ee8744033173894fbcf3fc5759747b24
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8449
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genomic diversity, life strategies and ecology of marine HTVC010P-type pelagiphages Du,S., Qin,F., Zhang,Z. and Zhao,Y. — — GenBank