Protein

View in Explore
Genbank accession
QIQ62508.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,89
Protein sequence
MTAFRLFSRLNTFYGMTGQLLAAGQLKFYDAGTTTPRPVYGDSGLAVNNGVAVRLDSSGRPDVDIWGKGSYFVELFDSLGAKQGEADGVSIPGGGGLTIPALDSSKFLTNNGAILLWSTIREVPDPVGMGGKVLGTDGENLLWQSLPRPPDSQYTVSTDMLKIGNFMIQWGRDTAPASGKAATLKLVTFPKPFANTPYFVKASVTAALATASSLVAESVSGTSTTNATFNFVTADSKERNSDPIISAIPFDWIAFGQGSA
Physico‐chemical
properties
protein length:260 AA
molecular weight: 27379,55960 Da
isoelectric point:5,19272
aromaticity:0,10000
hydropathy:-0,00615

Domains

Domains [InterPro]
DC_2164
STR
5–254
DC_2164
G3DSA:2.60.40.3940
RBD
154–256
G3DSA:2.60.40.3940
IPR054075
RBD
166–256
IPR054075
QIQ62508.1
1 260
Architecture
STR
STR 5-256 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Xylella phage Xfas53
[NCBI] 		670252 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Xylella fastidiosa subsp. multiplex
[NCBI] 		644357 Pseudomonadota > Gammaproteobacteria > Lysobacterales > Lysobacteraceae > Xylella > Xylella fastidiosa

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QIQ62508.1 [NCBI]
Genbank nucleotide accession
MT084350.1 [NCBI]
CDS location
range 20872 -> 21654
strand +
CDS
ATGACCGCCTTCCGCTTATTCTCACGCCTGAACACCTTTTATGGAATGACAGGGCAATTACTGGCCGCCGGACAGCTTAAGTTCTATGACGCAGGCACGACAACCCCGCGCCCTGTGTACGGCGATAGCGGATTGGCCGTGAACAACGGTGTTGCGGTTCGGCTGGATAGCTCAGGTCGCCCCGACGTGGATATCTGGGGGAAAGGGTCCTATTTCGTCGAACTCTTTGACAGCCTCGGTGCAAAACAGGGTGAGGCTGACGGCGTATCCATCCCTGGCGGCGGAGGCCTAACCATCCCCGCATTGGATTCAAGCAAATTCCTAACCAATAACGGGGCGATATTGCTGTGGTCAACAATTCGGGAAGTCCCTGACCCTGTCGGAATGGGCGGTAAGGTACTTGGCACCGATGGCGAGAATCTGCTTTGGCAAAGCCTCCCACGCCCGCCGGACTCGCAGTATACCGTCAGTACGGACATGTTGAAGATTGGGAATTTTATGATCCAGTGGGGCCGCGATACCGCCCCCGCGAGCGGCAAAGCGGCCACCTTGAAACTGGTGACGTTCCCAAAGCCATTCGCGAATACCCCATATTTCGTAAAAGCCAGCGTCACCGCAGCACTTGCAACAGCTAGCAGCCTCGTTGCAGAAAGCGTGAGCGGTACATCGACGACCAACGCAACGTTTAACTTCGTGACCGCAGACAGTAAAGAAAGAAACTCTGACCCCATCATCTCCGCTATTCCTTTTGACTGGATCGCCTTTGGGCAGGGGTCCGCATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
9b7ef433b6145dbf7a69327873281a827bd503bc6a88716125508b8eca50ff14
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8593
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete circularized genome data of two Spanish strains of Xylella fastidiosa (IVIA5235 and IVIA5901) using hybrid assembly approaches Arias-Giraldo,L.F., Giampetruzzi,A., Metis,M., Marco-Noales,E., Imperial,J., Velasco-Amo,M.P., Roman-Ecija,M. and Landa,B.B. 2020-05 — GenBank