Protein

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Genbank accession
WDR22579.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MNELFSQGGKGSTGILTNKQAVARHFGVKQNEVIYFAVGADLGGYKVIYDKENQQAYTLPVGIAPGTTAVSMSSTGNLVHSSGAVDLSDLAVKRREFITLQGDFVSGATLTRKHEVITYSNSRYRWTGTLPKVVAPDSLPDSSEWLNVDANPALSELAKAVGASMIGYKPTGTTTTTGTVKTKLDSFIDFANDYCGGPITGQPDLSDQLQQAIIDAFNSGVGDIKIVGDFYISKMILWYPGVRLLGGRYDTTLIRAATTFPVGDTMFRSYRPPLWNAGCHGLSMENLYLVGRSTKNLHAIDINDASYFNLEGVRLDLFNKGISFNRWIDETRVESGGIITYPNAHTPAIGGQSYFGTVTRCYAGSCVTCVDFNGVVNRCTFTSNTLTSSDLAYNFSNPRGVYETNTFITCNIEGVKSVWEWFFSINSPYHNVWINTSIDNGNPDITCLAKDGGRQTFIGLAIFPYGNTDLVNWYGINPNGYRSTVIGTDNGELLPENQLKTQVREELHTLTGIANKQWAGQQITETIPANGYKSYNITVTGLKGNAAVIASLSQIYHGITVNAASNNTGTVQVIISNYTAADIAINSYLSVTGIAKSFL
Physico‐chemical
properties
protein length:599 AA
molecular weight: 64979,19010 Da
isoelectric point:6,02052
aromaticity:0,10351
hydropathy:-0,12220

Domains

Domains [InterPro]
G3DSA:3.30.2020.50
ATT
1–95
G3DSA:3.30.2020.50 G3DSA:2.10.10.80 DC_1937
G3DSA:3.30.2020.50
ATT
1–100
G3DSA:3.30.2020.50 G3DSA:2.10.10.80
IPR040775
RBD
92–143
IPR040775
WDR22579.1
1 599
Architecture
ATT
RBD
ATT 1-159 | RBD 440-598 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WDR22579.1
1 599
Domain Start End Length (AA) Confidence
N-terminal 1 206 206 0,9934
Central domain 207 490 285 0,9917
C-terminal 491 599 108 0,9746
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-206
Central
207-490
C-terminal
491-599

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage vB_SenP_UTK0002
[NCBI] 		3028911 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WDR22579.1 [NCBI]
Genbank nucleotide accession
OQ359892.1 [NCBI]
CDS location
range 57322 -> 59121
strand -
CDS
ATGAACGAACTGTTCTCACAAGGCGGTAAAGGTTCAACTGGAATCTTAACCAATAAACAAGCAGTAGCTAGACACTTTGGTGTTAAGCAAAACGAGGTAATTTACTTTGCTGTTGGTGCTGATTTGGGTGGATATAAAGTAATTTATGATAAGGAAAATCAACAAGCTTATACATTACCTGTCGGTATTGCACCAGGAACAACTGCTGTATCAATGAGTTCAACAGGCAATCTGGTTCATTCATCCGGTGCAGTTGACCTAAGTGACTTGGCTGTTAAGCGCAGAGAGTTTATTACTCTTCAGGGGGATTTCGTTAGTGGTGCAACTCTTACCCGTAAGCATGAAGTTATTACTTACAGTAATAGTCGATATCGCTGGACTGGAACATTACCCAAAGTTGTTGCCCCAGACTCTTTACCTGATAGTTCTGAGTGGCTCAATGTGGATGCTAACCCTGCTTTGTCTGAATTAGCCAAAGCCGTTGGTGCTTCTATGATTGGGTATAAACCAACAGGGACTACCACCACTACGGGTACTGTTAAAACCAAACTGGATAGTTTTATAGATTTTGCCAATGATTACTGCGGTGGGCCAATTACGGGGCAACCGGACCTTTCCGACCAATTGCAACAAGCGATTATTGATGCCTTTAACTCAGGTGTTGGTGATATTAAAATCGTTGGAGATTTCTATATCTCTAAGATGATTTTATGGTATCCCGGTGTGCGTTTGCTTGGTGGGCGTTATGATACTACCTTAATTCGAGCAGCTACTACCTTCCCTGTCGGCGATACTATGTTCCGTTCTTATCGTCCTCCTTTGTGGAATGCAGGCTGCCATGGATTGTCCATGGAGAACTTGTATCTGGTAGGTCGTTCTACTAAGAACCTACATGCAATAGATATTAATGATGCCTCCTATTTTAACCTGGAAGGTGTACGGTTAGACCTGTTTAATAAGGGTATTTCTTTTAACAGATGGATTGATGAAACTCGCGTCGAATCTGGTGGAATTATTACTTATCCTAATGCCCATACACCAGCTATTGGAGGTCAATCCTACTTTGGTACGGTAACCCGTTGCTACGCTGGTAGCTGTGTTACTTGTGTAGATTTTAATGGGGTTGTGAATCGTTGCACATTCACAAGCAACACTTTGACGTCCAGTGATTTAGCATATAATTTCAGTAATCCTCGTGGTGTTTATGAAACAAACACATTCATTACTTGTAATATTGAGGGGGTTAAGAGTGTATGGGAGTGGTTTTTCTCGATAAACTCTCCTTATCATAACGTTTGGATAAACACCAGTATCGACAATGGTAATCCAGATATCACTTGTCTGGCTAAAGATGGTGGTAGACAAACCTTTATTGGTTTAGCCATTTTCCCTTATGGTAATACTGACTTAGTTAATTGGTATGGTATAAATCCAAATGGATATCGTAGTACTGTTATTGGTACTGATAATGGAGAATTGTTACCAGAAAACCAGTTAAAAACTCAGGTACGAGAAGAGTTGCATACTCTTACTGGTATTGCTAATAAACAATGGGCTGGGCAGCAGATAACAGAGACTATTCCTGCTAATGGGTATAAGTCTTACAACATTACTGTTACTGGTTTAAAAGGTAATGCTGCTGTTATTGCGTCATTATCTCAGATTTATCATGGCATTACTGTAAATGCTGCTAGTAATAATACAGGTACTGTTCAGGTTATTATTAGTAATTACACTGCGGCAGATATTGCTATTAATTCATATTTAAGTGTTACTGGTATTGCTAAATCATTCCTTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
692ac33f3b84dde435da344358d52fa07e3d7c76573df0d01ee35a21d0b3bfbc
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7525
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization of a Diverse Collection of Salmonella Phages Isolated from Tennessee Wastewater Bryan,D.W., Hudson,L.K., Wang,J. and Denes,T.G. — — GenBank