Protein

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Genbank accession
QQG32068.1 [GenBank]
Protein name
long tail fiber proximal subunit
RBP type
TSP
Evidence RBPdetect
Probability 0,60
TF
Evidence RBPdetect2
Probability 0,64
Protein sequence
MADIKHKFRAQSGLDAAGEKVINVASADRTVMSDGVNVEFLIQENTLQQYDPTRWYPEGFAAIYDNRIWVSNREIQSPAGDFTPEFWTSVRTDAKWTTISSGTSTLAPGSFISADTSGRQDITLNLPSEPQDGDTIFIKDIGGQPGYAKVTINASVQDIVKLGQAVRSVQMTHPYSQMVFVFSKRQWQLYTSDIERTARTITPSSIHEAQANEFLVRRYTIGAPIQVKLPKWANNGDMINFTDLEGMNPQFHLFVSTFDDNTSIGSVGRHQMEFRTSGDGFLVFDAAENLWRIFEGDLRQRLRIIREDTILRPNDHVMVFGVNNSTIKEITLTLPTGPAIGDTVRISLNYMRKGQTVNITCEGTDTIATNVQLLQFPKRSEYPPDATWVQNNTISFNGDTSYVPVLDLSYIEDGSLKYWVVADNTVTVERVDSKDNNTRKRLGVIALASEAEAQVDHENNPQKELAITPETLAKRTATESRRGIARIATTAQVNQNTDFAFADDLIITPKKLNEKQSTETMRGVAEIATQIETNAGELDTHIITPKKLHARKASEILTGIIALVKTGITTLAGVDRDTKGTNVYDYDDNEKAITPKSLHENKSTYTSQGGVYLATEQEVINGTNHSAAIPTAVTPVQLHKKTATEGRIGFTEIATQTETNEGTDDFRYVTPKKLNARKSSEDLTGIARVATQPEFDAGELDDVISSPKKIKTYFSDPARKSVVALSGLVESGNSWDHYNLDIQEASESQRGTLRLSTQVQVDQGIDDKTAITPKKLQAKKTSETSEGIIQIATQLETTTGTVGNKAVPPVHLKYAIQEQKDWEATTTRRGPVKLPAASSVWQGDNVIGSVGKEFEHEGYAVSPRELNIALSHYLPIEAKAVDSDLLDGLDSLQFIRRDIDQTVDGSLTLTKQTNVSAPLVSSSTAKFTTVMATTAVDIGDNSSTSVINLNALNNDWMIDAQSNSDYLDFTADEDVLRLKRDGNVEVGQTLSAGNKIDALKGFSVEGGTMVINPTSSNIQFGSQSKATNIQTTDASNLTVTDSSGNATVITTRNMVSQIGQNFVKKIGDSMSGNLLIDATIRVQIPEGLVTPDQAPNDSNPNAWSASVTSSTIYNKLPGFVVPVYGTNEEGNPVAIDYNEVKAPGTLTQHGIDKNSIWQMWAPRPSTVDPTYFAQTFWVRNYNSLTGNWDKWGRLYTSNNPPTSKEIGAVAAGGSAFDNLTIRDWLQIGNVRLVPNPETQALDVVWIP
Physico‐chemical
properties
protein length:1247 AA
molecular weight: 136758,82510 Da
isoelectric point:5,07728
aromaticity:0,07057
hydropathy:-0,41147

Domains

Domains [InterPro]
DC_1986
ATT
5–133
DC_1986 DC_1209
IPR048391
ATT
1101–1195
IPR048391
QQG32068.1
1 1247
Architecture
ATT
STR
ATT
STR
ATT 5-133 | STR 342-1100 | ATT 1101-1195 | STR 1196-1230 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QQG32068.1
1 1247
Domain Start End Length (AA) Confidence
N-terminal 1 361 361 0,8844
Central domain 362 704 344 0,0268
C-terminal 705 1247 542 0,2435
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-361
Central
362-704
C-terminal
705-1247

Taxonomy

  Name Taxonomy ID Lineage
Phage Citrobacter phage CkP1
[NCBI] 		2799684 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Citrobacter koseri
[NCBI] 		545 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QQG32068.1 [NCBI]
Genbank nucleotide accession
MW239124 [NCBI]
CDS location
range 150851 -> 154594
strand +
CDS
ATGGCCGACATCAAGCATAAGTTCAGAGCGCAATCTGGTCTGGACGCCGCCGGTGAGAAAGTTATCAACGTAGCTAGCGCAGACCGCACGGTCATGTCTGACGGTGTAAACGTTGAATTTCTTATCCAAGAAAACACATTACAACAATACGATCCAACTCGTTGGTATCCGGAAGGTTTTGCAGCGATTTATGATAACCGTATTTGGGTTTCAAATCGCGAAATTCAATCTCCAGCTGGAGATTTTACACCAGAATTTTGGACGTCAGTACGTACTGATGCAAAATGGACCACTATTTCGTCTGGAACAAGCACATTAGCTCCAGGTAGTTTTATTTCTGCTGATACTTCAGGTCGTCAAGATATCACTTTAAATCTTCCAAGTGAGCCTCAAGATGGCGACACGATATTCATAAAAGATATTGGCGGACAGCCTGGATATGCAAAAGTAACAATCAACGCGTCTGTTCAAGATATCGTTAAACTTGGACAAGCTGTACGAAGTGTTCAAATGACGCATCCGTATAGCCAAATGGTTTTTGTATTCAGCAAACGTCAATGGCAATTATATACCAGTGATATTGAAAGAACAGCTCGTACGATTACTCCATCTTCAATTCATGAAGCACAAGCTAATGAATTTTTAGTTCGTCGTTACACTATCGGTGCACCTATTCAGGTTAAACTTCCTAAATGGGCAAACAATGGTGATATGATTAACTTCACTGATTTGGAAGGAATGAATCCTCAGTTCCATCTTTTTGTTAGCACCTTTGATGATAACACAAGCATTGGTTCTGTTGGAAGACATCAGATGGAATTCAGAACTTCTGGTGACGGGTTCTTAGTATTTGATGCAGCTGAAAATCTGTGGAGAATTTTTGAAGGAGATCTTCGTCAACGTTTACGCATCATTAGAGAAGATACTATTCTTCGTCCTAATGACCATGTTATGGTTTTTGGTGTAAACAACTCAACTATCAAAGAAATCACTCTTACACTTCCAACTGGACCAGCAATTGGAGATACTGTTCGTATTTCTTTGAATTATATGAGAAAGGGACAAACTGTTAACATCACTTGTGAAGGTACTGATACCATTGCAACTAATGTTCAGTTACTGCAATTCCCTAAACGTTCAGAATATCCACCGGATGCAACGTGGGTACAGAACAACACTATATCTTTTAATGGTGATACTTCTTACGTTCCGGTATTAGATCTTTCTTATATCGAAGATGGAAGTTTAAAATATTGGGTTGTTGCTGATAACACAGTTACTGTGGAACGTGTTGATTCTAAAGATAATAATACACGTAAAAGATTAGGTGTTATCGCTTTAGCAAGCGAAGCTGAAGCTCAAGTAGACCATGAAAATAATCCACAAAAAGAGTTAGCAATCACACCAGAAACTTTAGCTAAACGTACAGCTACTGAATCTCGTCGTGGTATCGCTCGTATTGCTACTACCGCTCAGGTCAATCAGAACACTGATTTCGCATTTGCAGATGATCTTATCATTACTCCTAAAAAGCTTAATGAAAAACAATCAACTGAAACTATGCGTGGTGTAGCTGAAATTGCTACTCAGATTGAAACTAATGCTGGAGAACTTGATACTCATATCATTACTCCTAAAAAGTTGCATGCTCGTAAAGCTTCAGAAATACTTACCGGTATTATTGCACTAGTAAAAACTGGAATTACCACGCTTGCTGGTGTAGATCGTGATACTAAAGGAACTAACGTTTACGACTACGATGATAATGAAAAAGCAATCACTCCGAAATCGTTGCATGAAAATAAATCGACTTATACTTCTCAAGGTGGAGTTTATTTAGCTACTGAACAAGAGGTAATTAATGGAACTAATCATTCTGCTGCAATTCCGACGGCTGTAACACCAGTTCAGTTACATAAAAAGACCGCTACTGAAGGAAGAATCGGTTTTACTGAAATTGCTACTCAGACTGAAACTAATGAAGGAACAGATGATTTCCGTTATGTTACACCTAAAAAGTTAAATGCTCGTAAATCATCTGAAGATTTGACTGGTATTGCTAGAGTTGCTACGCAACCAGAGTTTGACGCTGGAGAGCTTGATGATGTTATATCTTCTCCTAAGAAAATTAAAACCTATTTTTCTGATCCAGCACGTAAATCTGTTGTTGCTCTGTCTGGATTAGTTGAATCAGGTAACTCCTGGGACCATTATAACCTTGATATTCAAGAAGCATCTGAGAGTCAGCGAGGAACGTTGAGATTATCAACACAAGTACAGGTTGATCAAGGAATAGATGACAAAACTGCTATTACGCCTAAAAAGCTTCAAGCTAAAAAGACTTCTGAAACATCTGAAGGGATAATTCAGATTGCTACTCAACTTGAAACTACTACAGGCACTGTTGGAAATAAAGCAGTTCCTCCTGTTCATCTGAAGTATGCTATACAAGAACAAAAAGATTGGGAAGCTACTACTACTCGTAGAGGACCAGTTAAATTACCTGCAGCTTCTTCAGTATGGCAAGGTGATAATGTAATTGGTTCAGTTGGTAAAGAATTTGAGCATGAAGGATACGCAGTTTCTCCTAGAGAATTGAATATTGCTTTAAGTCATTATCTTCCAATTGAAGCTAAAGCTGTTGATTCTGATTTGTTAGATGGATTAGATTCTCTTCAGTTCATTCGTAGAGATATCGATCAAACAGTTGATGGTTCATTGACTTTAACTAAACAGACGAACGTTAGTGCACCTCTAGTGTCCTCTAGTACTGCGAAGTTCACTACCGTAATGGCTACTACAGCTGTTGATATTGGTGATAACTCAAGTACTTCGGTGATTAATTTGAATGCATTGAACAACGATTGGATGATCGATGCTCAATCTAATTCAGATTATTTGGATTTTACTGCCGATGAAGATGTTCTTCGTTTAAAACGTGATGGTAATGTTGAAGTTGGACAAACGCTTTCAGCTGGAAACAAAATTGATGCGTTGAAAGGCTTTAGTGTTGAAGGTGGTACAATGGTTATTAACCCTACCTCTTCAAACATTCAATTTGGTTCACAGTCAAAAGCTACTAATATTCAGACAACTGATGCTAGTAATTTGACGGTAACTGACTCATCCGGTAATGCTACTGTAATCACTACAAGAAATATGGTTTCTCAGATAGGCCAAAATTTCGTTAAGAAAATTGGCGATTCAATGTCTGGTAATCTATTAATTGATGCTACTATCAGAGTTCAAATCCCGGAAGGACTTGTTACTCCAGATCAAGCTCCTAATGATAGCAACCCAAATGCATGGTCAGCATCTGTAACGTCATCAACGATTTATAATAAGCTTCCTGGATTTGTAGTTCCAGTTTATGGAACGAATGAAGAAGGAAACCCTGTTGCTATCGATTACAATGAAGTTAAAGCTCCTGGTACTTTAACTCAACATGGTATTGATAAAAACAGTATTTGGCAAATGTGGGCACCACGTCCTTCGACTGTAGACCCTACTTATTTTGCTCAAACTTTCTGGGTTCGTAACTATAACTCTCTTACTGGTAACTGGGATAAATGGGGAAGACTGTATACCAGCAATAACCCACCTACTTCTAAAGAAATTGGTGCAGTTGCTGCCGGTGGTTCAGCATTCGATAACTTAACTATTCGTGATTGGTTACAGATTGGTAACGTTCGTTTAGTACCAAATCCTGAAACTCAAGCACTTGATGTTGTTTGGATTCCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
3b75eff4efc4b0684b0fad24e96d031ae5dcf94721adcebc744ed06fb5be3bdf
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5699
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
CkP1, a S16-like broad-host-range myovirus, recognizes Citrobacter koseri lipopolysaccharide through its long tail fibres Oliveira,H., Santos,S., Pires,D., Pinto,G., Carrera,J., Briers,Y., Schmelcher,M., Dotsch,A. and Azeredo,J. 2022 — GenBank