Protein

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Genbank accession
YP_009823150.1 [GenBank]
Protein name
hypothetical protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,55
Protein sequence
MANDNYTANADGSCYVGMFNASLLQQAINSATVSSWTQYTSTNINDFIPAYSPDRADIAIFETDELRKLTNWSNKWGYDRVNRKIVGVGTSEGYFAGAKNYRGKQVTFPLADNAFSVQYGPLPLVNEGHTYDRNSSIPDSVGRFYCTTLVSIGSPKIYRRDLAGEYTDVFTLSSVNVAGLAGTSNLLHALDVFPEMGAEGSVITFGQRGALVRYDIATGVGTLLYTAATDNSHYYGVCVYSNGQIIFGAGESSSQLYRLDSSGTVTALSTAPPHPINCKSSYKYLPSPVDGDNACYSLENDTMRMYKHNLTLDIWTDIGPAVPTGNLVQTVFVPLRGLNAFACFCGKGRTGGLDQSEFWIYKVTT
Physico‐chemical
properties
protein length:365 AA
molecular weight: 39713,86920 Da
isoelectric point:5,38307
aromaticity:0,11781
hydropathy:-0,17808

Domains

Domains [InterPro]
DC_0882
ATT
1–125
DC_0882 SSF63829 DC_0880
YP_009823150.1
1 365
Architecture
ATT
STR
RBD
ATT 1-125 | STR 135-272 | RBD 277-365
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009823150.1
1 365
Domain Start End Length (AA) Confidence
N-terminal 1 21 21 0,2324
Central domain 22 220 200 0,6243
C-terminal 221 365 144 0,5964
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-21
Central
22-220
C-terminal
221-365

Taxonomy

  Name Taxonomy ID Lineage
Phage Rheinheimera phage vB_RspM_Barba19A
[NCBI] 		2565658 Uroviricota > Caudoviricetes > Barbavirus >
Host Rheinheimera sp. BAL341
[NCBI] 		1708203 Pseudomonadota > Gammaproteobacteria > Chromatiales > Chromatiaceae > Rheinheimera >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009823150.1 [NCBI]
Genbank nucleotide accession
NC_048190 [NCBI]
CDS location
range 79979 -> 81076
strand +
CDS
ATGGCTAACGACAATTATACAGCAAACGCTGACGGCTCTTGTTATGTTGGGATGTTTAACGCATCTTTATTACAACAAGCTATAAACTCCGCTACGGTCAGCTCATGGACGCAATACACCAGTACAAACATTAATGATTTTATTCCGGCATATAGCCCTGACAGGGCTGATATTGCTATATTTGAAACTGACGAGCTTAGAAAGCTGACAAATTGGTCTAACAAGTGGGGCTACGACAGGGTAAACCGCAAAATTGTTGGTGTCGGCACATCTGAGGGGTATTTTGCAGGAGCTAAAAACTACAGAGGAAAGCAAGTAACATTTCCTCTAGCCGACAATGCTTTTAGTGTGCAGTACGGGCCGTTACCTTTAGTTAACGAGGGGCATACTTATGATCGAAATAGCTCAATACCAGACAGTGTAGGCAGGTTTTATTGCACGACTTTAGTATCAATAGGTAGCCCCAAAATTTATCGCCGTGATTTAGCAGGTGAGTACACTGATGTATTTACCTTAAGTTCAGTAAATGTTGCAGGCTTGGCAGGCACAAGTAATCTACTTCATGCCCTCGATGTATTTCCCGAAATGGGCGCAGAGGGTTCTGTCATTACGTTTGGGCAACGAGGCGCGTTGGTTAGGTATGACATAGCGACAGGCGTCGGCACTTTGCTTTACACTGCCGCAACAGATAACAGTCATTATTATGGCGTTTGTGTTTACTCCAACGGTCAGATTATATTCGGCGCTGGTGAATCATCAAGCCAACTGTATCGACTTGATAGTAGTGGTACGGTAACTGCGTTATCAACTGCGCCACCGCATCCTATTAACTGCAAGTCAAGTTACAAATACCTGCCCAGCCCTGTTGATGGCGACAACGCTTGCTACAGCTTGGAAAATGACACCATGAGAATGTATAAACATAATTTAACATTAGATATATGGACTGATATAGGGCCAGCAGTACCGACAGGCAATTTGGTGCAGACCGTTTTTGTACCTTTACGCGGCCTAAATGCGTTTGCTTGTTTTTGCGGCAAGGGTAGGACTGGCGGGTTAGACCAATCGGAATTCTGGATTTATAAGGTAACTACATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
96d7a933f83fa5560ed6103b8c4382980a9fdd1457ae47b7b942f590bb906bbc
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5963
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genomic and seasonal variations among aquatic phages infecting the Baltic Sea Gammaproteobacteria Rheinheimera sp. bal341 Nilsson,E., Li,K., Fridlund,J., Sulcius,S., Bunse,C., Karlsson,C.M.G., Lindh,M., Lundin,D., Pinhassi,J. and Holmfeldt,K. 2019-09-15 — GenBank