Protein

View in Explore
Genbank accession
XOD43409.1 [GenBank]
Protein name
receptor-binding protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,90
TSP
Evidence RBPdetect2
Probability 0,93
Protein sequence
MKLDNLITKLHSYFSQKFVSQLENNFEQIKYWTNKSDDSFNEHLTTQKNAHTTDQIKHKTTKGKDVVLSNHENYQDELIEHLVLGHNGDGIQELRASHTSMDAQSFDSLHQRLYHDFLRESNAREELRADLTKKIQRIVNVDDFGGDPTGQKDSTKAFQDALGNGNVQVTMSGGTYLTTGIKMPNNSRLVGQGKDITTIKLMDKTPAENIGITNLKMSGGAENISLESFSFNGNKFRQNKTLKATGGSRSSNIRFAGVTNGYIYNVKSYDALLHCIDVTYANDNYYYEGDGNRVPYALESKHIHIDNCEVYGCGDDGITTHHSRYITISNCYAHTPTGGSNNNGVEIDDGSQYVFLSNNRTKGNFGGLEIKAHSNASAASGVFVNGHVSIEDTRAYNIRHIGHHRAKTDNKSLTAYDVVLNNCLALNPKYNGVYPGSTPRALLISAYKNVSVNNFTAIGDDDFGKLEGGKLDKKQPAIAIQFMSENISLNNINVRNFKNAEVDIRLFGGDNRPSRVILNNINIWNSSNNIGIGVGSKIYDTKITNCNLHGNGSGIGLRLTNNHAMISGITANNYSTPAWIAGEKYDTPPTVGKGGASIASTGSAGVANASAVIASTGGSKAYSNRSFVLGSGANSKSYGSRSGIINSLNSETDKSGYTQLILNSNRVKSPGNYHVVAGYGSSGNASTSNIKFDLSTYSGNLTLAGQLKQDSADIAELFESQNGLAIDLGTIVTLDGDKIRKAQPNDTPIGVISGTAALVANEKTFHHKDRFLKNEYGVTITNRKQVEFVDDEGNVSFEWRDIPVENPEYNDKIDYQSRSERPEWNVVGLLGQIYTNIEKDVIPGDYINGRAGVGYKDNVNGKGRVMKITSEYTEERGCAIALVLWGAK
Physico‐chemical
properties
protein length:888 AA
molecular weight: 96931,24550 Da
isoelectric point:6,82457
aromaticity:0,07995
hydropathy:-0,54088

Domains

Domains [InterPro]
DC_0125
ATT
1–265
DC_0125 IPR006626 IPR006626 IPR006626 IPR006626 IPR006626 IPR006626 G3DSA:2.160.10.20 G3DSA:2.40.300.10
IPR012334
STR
122–589
IPR012334 IPR021865
IPR011050
STR
134–527
IPR011050 G3DSA:4.10.80.40
IPR024535
ENZ
138–367
IPR024535 DC_0616
IPR006626
Unmapped
258–280
IPR006626
XOD43409.1
1 888
Architecture
ATT
STR
RBD
ATT 1-265 | STR 266-659 | RBD 660-884 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XOD43409.1
1 888
Domain Start End Length (AA) Confidence
N-terminal 1 153 153 0,9938
Central domain 154 616 464 0,9826
C-terminal 617 888 271 0,8318
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-153
Central
154-616
C-terminal
617-888

Taxonomy

  Name Taxonomy ID Lineage
Phage Staphylococcus phage vB_SepS_E72m5
[NCBI] 		3398617 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XOD43409.1 [NCBI]
Genbank nucleotide accession
PV036961 [NCBI]
CDS location
range 15279 -> 17945
strand +
CDS
TTGAAATTAGATAACTTAATTACGAAACTTCACTCGTACTTTAGTCAAAAGTTTGTAAGTCAACTTGAGAATAACTTCGAACAAATAAAATACTGGACTAATAAAAGTGATGATAGCTTTAACGAGCATTTAACCACTCAAAAAAATGCGCATACAACTGATCAAATCAAACACAAAACTACAAAAGGTAAAGATGTTGTATTATCTAATCATGAAAATTATCAAGATGAACTTATTGAACATCTTGTGTTAGGACATAATGGAGATGGAATACAAGAATTAAGAGCAAGTCACACATCAATGGACGCTCAAAGTTTCGATTCTTTACACCAACGTCTATATCACGACTTTTTAAGAGAAAGTAACGCTAGAGAAGAACTAAGAGCCGACTTAACCAAGAAAATACAACGTATTGTTAATGTTGATGATTTCGGAGGAGATCCAACAGGACAAAAAGACAGTACAAAGGCATTTCAAGACGCATTAGGTAACGGCAATGTACAGGTAACTATGAGTGGCGGTACTTACCTTACAACAGGTATTAAAATGCCTAACAACTCTCGTTTGGTAGGACAAGGTAAAGACATTACTACTATTAAGCTAATGGATAAAACACCAGCAGAGAACATAGGTATCACTAACTTAAAAATGAGTGGCGGAGCTGAAAACATTTCTTTAGAAAGTTTTTCGTTCAATGGGAATAAGTTTAGACAAAATAAAACACTTAAAGCTACCGGTGGCTCTCGTTCATCTAACATTAGATTTGCGGGTGTAACTAATGGATATATCTATAACGTTAAATCATATGACGCTTTACTACACTGTATCGATGTAACATATGCAAATGACAATTATTACTACGAAGGCGATGGAAACAGAGTGCCTTACGCATTAGAAAGTAAGCATATTCATATTGATAATTGTGAGGTATATGGTTGCGGAGATGATGGTATCACTACCCATCACTCTCGTTACATTACAATTTCTAATTGTTATGCACATACACCAACAGGTGGAAGTAATAACAACGGTGTAGAAATTGACGATGGCTCACAATATGTGTTCTTATCAAACAACAGAACCAAAGGTAACTTCGGTGGTTTAGAAATCAAAGCACACAGTAATGCAAGTGCTGCAAGTGGTGTGTTCGTTAACGGTCACGTATCAATCGAAGATACAAGAGCTTACAACATTCGACACATCGGTCATCATAGAGCTAAAACGGACAATAAAAGTTTGACTGCTTATGACGTGGTGCTAAATAATTGCTTAGCTTTAAACCCTAAATACAATGGTGTGTATCCAGGCTCAACACCTAGAGCATTATTAATCAGTGCTTATAAAAATGTATCAGTCAATAATTTCACTGCAATTGGTGATGATGATTTCGGAAAATTAGAAGGTGGAAAACTAGATAAAAAACAACCAGCAATAGCCATCCAATTCATGTCCGAAAACATCTCGCTTAATAATATTAATGTGCGTAACTTTAAAAATGCAGAAGTAGATATTAGATTATTTGGCGGAGATAATAGACCTTCAAGAGTTATTTTAAACAATATCAATATTTGGAATTCATCTAACAATATCGGTATCGGTGTTGGAAGTAAAATATACGATACTAAAATAACTAATTGTAACTTACACGGTAATGGTTCGGGCATAGGATTACGTTTGACAAATAACCACGCTATGATTAGTGGTATCACAGCAAACAATTATTCAACACCTGCATGGATAGCCGGCGAAAAATACGACACACCTCCTACAGTTGGAAAAGGTGGTGCTAGTATAGCGTCTACAGGAAGTGCAGGCGTAGCTAATGCTAGTGCAGTTATTGCGTCAACAGGTGGTTCGAAAGCATACAGTAATCGTAGCTTTGTATTAGGTTCTGGTGCTAACTCCAAATCTTATGGATCACGTAGTGGTATTATCAACTCGTTAAATTCAGAAACAGACAAGTCAGGATACACACAATTAATTCTTAATAGTAATCGTGTTAAGTCACCTGGTAACTATCATGTTGTCGCTGGATATGGTTCTAGTGGTAATGCTTCTACATCTAACATTAAATTTGATTTAAGCACTTATTCAGGAAACTTAACTTTAGCCGGTCAACTTAAACAAGATAGTGCCGATATCGCAGAGTTATTTGAGTCACAAAATGGATTAGCAATCGATTTAGGAACTATCGTTACATTAGACGGCGATAAGATAAGAAAAGCGCAACCTAATGACACACCAATTGGCGTTATATCTGGAACTGCTGCATTGGTAGCAAATGAAAAAACATTCCACCATAAAGATAGATTTTTAAAAAATGAGTATGGAGTAACGATTACAAACAGAAAACAAGTTGAATTTGTAGACGATGAAGGAAATGTTTCTTTCGAATGGCGTGACATACCAGTAGAAAACCCTGAATATAACGACAAAATCGATTATCAATCACGTTCAGAACGACCTGAATGGAATGTAGTCGGATTATTAGGTCAAATCTACACGAACATTGAAAAAGACGTTATACCAGGCGACTATATCAACGGTAGAGCAGGTGTAGGATATAAAGATAATGTGAATGGTAAAGGTCGTGTCATGAAAATAACTTCTGAATACACTGAAGAACGTGGATGTGCAATAGCATTAGTATTGTGGGGTGCTAAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
25c4583ae94cfc1624dee57784c83b989a69f9e04dd231fd47f7cf2864b9101c
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,3412
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Virion content unpacked by long-read sequencing: Stress-induced changes in transmitted staphylococcal mobilome due to phage-satellite interactions Botka,T., Smetanova,S., Vinco,A., Kucerova,E., Rovnakova,K., Sivakova,A., Maslanova,I. and Pantucek,R. 2025 41206046 GenBank