Protein

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Genbank accession
AGH31832.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
Protein sequence
MASPQLTQDLSPPEVPGYTDDVNGLFARLQPVTDELEAAATWVESTKNTAQTEKTATQTARDATETARDDAQSIKSDGLASAGDLRDQTQTLNDCAHALDNFVGSWDYATRTSQGQYAWSDTTLAWSDDSIAWDDGVVNFIPPVAVYRNGKIWSANKEIYNAEGDRKLPPGQSPDWDDTGLPNVIIGQAGDVMYAVEKPGADWEECDGAVYLQTTYPELYNVLGTGGSNPPFDPNTEFAVPLIEPLQQDNIGLWQPTVVRAYIRIVDASA
Physico‐chemical
properties
protein length:270 AA
molecular weight: 29393,72610 Da
isoelectric point:4,05003
aromaticity:0,08889
hydropathy:-0,50778

Domains

Domains [InterPro]
DC_1675
STR
19–255
DC_1675
IPR037053
ATT
183–242
IPR037053
IPR011083
ATT
192–225
IPR011083
SSF88874
STR
194–229
SSF88874
AGH31832.1
1 270
Architecture
STR
ATT
STR
STR 19-182 | ATT 183-242 | STR 243-255 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Salicola phage CGphi29
[NCBI] 		754067 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Salicola
[NCBI] 		332339 Bacteria > Proteobacteria > Gammaproteobacteria > Oceanospirillales > Halomonadaceae >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AGH31832.1 [NCBI]
Genbank nucleotide accession
HQ634153.1 [NCBI]
CDS location
range 28829 -> 29641
strand +
CDS
ATGGCATCACCGCAGCTCACACAAGACCTCTCGCCCCCGGAAGTCCCGGGGTACACGGATGACGTTAACGGCCTGTTTGCGCGTCTCCAGCCCGTCACCGATGAGCTTGAGGCGGCAGCAACGTGGGTAGAGAGCACCAAAAACACAGCCCAGACCGAAAAGACCGCAACGCAGACGGCGCGGGATGCTACTGAGACAGCGCGGGACGATGCACAGAGCATCAAATCAGACGGCCTGGCCAGCGCAGGCGATCTGCGCGATCAGACGCAGACGCTCAACGATTGCGCGCATGCGCTGGATAACTTTGTCGGCAGCTGGGACTACGCAACGCGGACATCACAGGGGCAGTATGCCTGGAGTGACACAACGCTGGCATGGTCTGACGACTCTATTGCGTGGGATGACGGTGTGGTTAATTTCATTCCGCCGGTGGCGGTCTATCGCAACGGCAAAATCTGGTCAGCTAATAAAGAGATTTACAACGCTGAGGGTGATCGCAAACTGCCCCCAGGCCAATCGCCGGATTGGGATGATACCGGGCTGCCCAATGTGATTATCGGGCAAGCTGGGGATGTCATGTACGCAGTTGAGAAACCGGGCGCAGACTGGGAAGAGTGTGACGGCGCCGTATATCTGCAAACAACATACCCCGAACTTTATAACGTACTCGGAACCGGCGGCAGCAACCCGCCGTTTGACCCCAACACCGAGTTTGCAGTACCGCTTATAGAGCCGCTGCAACAAGACAATATTGGGCTCTGGCAACCGACTGTTGTCAGGGCTTACATTCGTATAGTAGACGCGAGCGCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
a64bddd24af8416a2e1c6a5b736053d1d182dd6f33d4f1f266c4f2ea7faf7836
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,6531
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Salicola phage CGphi29 Henn,M.R., Dillon,J., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E.R., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Haas,B., Nusbaum,C. and Birren,B. 2011-09-23 — GenBank