Protein

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Genbank accession
WPK20890.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MLPFPRMIKYANKMKVPEVKEIFMYNGYSASVIPATALLLLYKNGDLMGIGGTTSQNYGFGNGVHNAKVKEWALIYQNVKRFRTAQGSFNLIQTEDNKFYYSGVGRAIGTGLSTVSTYTDCTSYFTSVFNATQLSQIKDIQLVGEGIFVLLENGTLYGMGANTQGYFGNNTTTRLSTFTSINTNVDSVKTGSSAVIVQKIDKTLWVTGQNTWGSLGISNNATNIRVWTQMGAFANNTVIHYELGGSASWVVYKHNTNNTYTVRASGIQSEGNLGNGSAASSGTVLSTISTLPISDDMIMKSNSLTYGGLTVKTNNSLYMCGINTYGRLGRGNTTSSTTFVVPVDAPKVGSIELFCPSECTNVYMDNQGDVYLSGYIPQATGTTVSDYYTKFQLYKIPSRGI
Physico‐chemical
properties
protein length:401 AA
molecular weight: 43500,55820 Da
isoelectric point:9,00889
aromaticity:0,10973
hydropathy:-0,13491

Domains

Domains [InterPro]
IPR009091
STR
29–303
IPR009091 IPR009091
IPR009091
STR
32–280
IPR009091
DC_0918
STR
81–190
DC_0918 IPR009091
IPR051553
Unmapped
94–373
IPR051553
DC_1778
STR
180–295
DC_1778
DC_0436
RBD
275–400
DC_0436
WPK20890.1
1 401
Architecture
STR
STR 29-400 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WPK20890.1
1 401
Domain Start End Length (AA) Confidence
N-terminal 1 253 253 0,0432
Central domain 254 390 138 0,4875
C-terminal 391 401 10 0,9807
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-253
Central
254-390
C-terminal
391-401

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage SD-15_S21
[NCBI] 		3096171 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Salmonella typhimurium
[NCBI] 		90371 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WPK20890.1 [NCBI]
Genbank nucleotide accession
OR699188 [NCBI]
CDS location
range 154833 -> 156038
strand +
CDS
ATGTTACCTTTTCCAAGGATGATAAAATACGCAAATAAAATGAAAGTTCCTGAAGTGAAAGAAATCTTTATGTACAATGGTTATAGTGCGTCAGTAATTCCAGCAACAGCACTCTTACTATTATATAAAAATGGAGACTTAATGGGTATAGGTGGAACTACTTCACAAAACTATGGATTCGGAAATGGTGTACATAATGCGAAAGTAAAAGAATGGGCTTTAATATACCAAAATGTAAAACGTTTTAGAACAGCCCAAGGTTCTTTTAATTTAATCCAAACCGAAGATAATAAATTTTATTACAGTGGCGTAGGTAGAGCTATTGGTACAGGATTAAGTACTGTCAGTACTTATACTGATTGTACTTCATATTTTACATCAGTATTCAATGCTACACAATTGTCCCAAATTAAGGACATTCAACTTGTAGGTGAGGGTATTTTTGTTTTACTTGAAAATGGTACGCTATATGGAATGGGGGCGAATACACAGGGATATTTTGGTAATAACACAACCACTAGATTATCAACTTTTACGTCAATTAATACGAATGTTGATAGTGTTAAAACAGGTTCAAGTGCAGTGATTGTGCAGAAAATTGATAAAACACTTTGGGTCACTGGTCAAAACACATGGGGTTCGCTTGGTATAAGTAATAATGCAACTAACATTAGAGTATGGACACAAATGGGTGCATTCGCCAACAATACTGTTATACATTATGAACTCGGTGGGAGTGCATCATGGGTTGTATATAAACACAACACGAATAATACATATACAGTTCGTGCAAGTGGGATTCAATCGGAAGGTAACTTGGGTAATGGTTCAGCCGCTTCATCAGGGACAGTATTATCTACAATCTCCACTCTACCAATATCAGATGATATGATAATGAAATCAAATTCATTAACATATGGTGGTCTTACGGTTAAAACTAACAATTCACTTTATATGTGTGGTATAAACACATATGGTAGGCTCGGTCGCGGTAATACAACATCAAGTACTACATTTGTAGTTCCAGTTGATGCACCTAAAGTTGGCAGCATCGAGTTATTCTGTCCAAGTGAATGTACAAATGTGTATATGGATAATCAAGGGGATGTGTATTTGAGTGGCTATATCCCACAAGCGACAGGTACAACAGTTTCTGATTATTACACTAAATTTCAATTATATAAAATACCCAGTCGTGGTATATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
85bbdaabd809d1dc059132d94334895de586cdcf35e106ed176ec3169e221e13
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8704
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence a group of lytic Salmonella phages Dlamini,S.B., Montso,P.K., Ateba,C.N., Mnisi,M.C. and Mlambo,V. 2023-09 — GenBank