Protein

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Genbank accession
NP_835706.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 0,99
Protein sequence
MRAKDFYKTDIKVFTEVVGFPSPGSYENDNIKLEIAPDDQLKAQIRALFIDLFRKLNIDFDALTFEIVRIKRQYYHIHSITYGGNPISLVNDSYYDHPDFILVRNESFVVVGKKVPAISPLFFTLTLYELQPLKLLVAEFVAKNFTTNPTAVPGVSPYVSGIYGMNQNGDVVFVSKFSQPIKLDEAYVFVQKILIPSYSYVPPPPPSPSEPPPITTSDVNIELYFPNITTTDPNISLYFPDITTPSDIIVSLGFFYDQSPALFLNLHDGSSGEVGLLDSSGSYKQVTTTSIQYGGVAAWGYDVFWLDYYTTSSTETVSIKRLFLGGGYIEDYITFSNQGSTTFNALLYDITKSVFIVSADNGTYMVRKSPYLVTFSDFFGTASIFMDLNYSTSVLYYTDNTPYLKYASYTTTSPYFFNPINSGFLTVSYLSYFSVYVSTSTQYFYLTSSGANVVLKSTGNNLTFYSSPQMGALEVDWENVWNEPVNLLFFSAVTGSAWGLFKSPKSSVSVSFIGAVSKFVRQIAPVVNYVPVSNVYLTNSNSSMKNSFQSLGLTPSAALNTQLVSSEIPYDTYSQVPPFSNAGFKWELKAANYPFDTYSQVPPFSNAGFKWELKAANYPFDTYSQVPPFSNAGFKWELKAANKSYPTTTPEVDLDYLRFKF
Physico‐chemical
properties
protein length:661 AA
molecular weight: 73979,47200 Da
isoelectric point:4,92376
aromaticity:0,16490
hydropathy:-0,03555

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
NP_835706.1
1 661
Domain Start End Length (AA) Confidence
N-terminal 1 397 397 0,8692
Central domain 398 650 254 0,2200
C-terminal 651 661 10 0,0470
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-397
Central
398-650
C-terminal
651-661

Taxonomy

  Name Taxonomy ID Lineage
Phage Rhodothermus phage RM378
[NCBI] 		148943 No lineage information
Host Rhodothermus marinus
[NCBI] 		29549 cellular organisms > Bacteria > Pseudomonadati > FCB group > Bacteroidota/Chlorobiota group > Rhodothermota

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
NP_835706.1 [NCBI]
Genbank nucleotide accession
NC_004735 [NCBI]
CDS location
range 108935 -> 110920
strand -
CDS
ATGAGAGCGAAGGATTTTTATAAAACCGATATAAAAGTATTCACCGAAGTTGTTGGTTTCCCTTCTCCCGGTAGCTACGAAAATGATAATATAAAACTGGAAATTGCCCCGGATGATCAACTCAAAGCTCAGATTCGTGCGCTTTTTATCGATCTTTTTCGTAAGCTGAATATCGATTTTGATGCGCTCACTTTTGAAATTGTGAGAATCAAGCGACAGTACTATCACATACATTCCATTACGTATGGAGGAAATCCTATCTCGCTTGTGAATGACAGTTATTATGATCACCCGGATTTTATCCTTGTTCGAAATGAATCGTTTGTGGTTGTGGGAAAGAAAGTACCGGCTATTTCCCCGCTTTTCTTTACCCTTACGCTTTATGAATTGCAGCCTCTGAAGCTTCTCGTTGCCGAATTTGTAGCCAAAAACTTTACCACCAATCCCACGGCTGTTCCGGGGGTTTCTCCTTATGTCAGCGGAATCTATGGAATGAATCAGAATGGGGACGTGGTGTTTGTATCGAAGTTTTCTCAACCGATCAAGCTGGATGAAGCTTATGTTTTCGTGCAGAAGATTCTGATCCCCTCTTATTCGTATGTTCCTCCTCCGCCCCCATCCCCAAGTGAACCGCCTCCGATTACTACATCCGACGTTAATATAGAACTGTATTTCCCGAACATTACAACTACAGACCCGAATATCTCTCTTTACTTCCCGGATATTACTACCCCTTCGGATATAATCGTATCGCTTGGATTCTTTTACGATCAATCTCCCGCACTCTTTCTCAATCTGCACGATGGATCTTCCGGAGAAGTGGGACTCCTGGATTCCAGTGGAAGTTATAAACAGGTTACCACCACCAGCATTCAATACGGTGGGGTAGCTGCATGGGGATATGATGTGTTCTGGTTGGATTATTACACGACATCCAGCACCGAAACCGTCTCAATCAAACGTCTTTTCCTTGGCGGCGGATATATTGAAGATTATATAACATTTTCCAATCAGGGTAGCACCACATTCAACGCATTACTTTACGATATAACAAAATCTGTTTTTATCGTTTCGGCTGATAATGGAACATACATGGTTCGGAAATCACCCTATTTAGTCACCTTCTCCGACTTTTTCGGAACGGCAAGCATTTTCATGGATTTGAATTATTCGACAAGTGTTCTGTATTACACGGATAATACACCTTATTTGAAATATGCCAGTTATACAACCACATCACCCTATTTCTTCAACCCAATTAATTCAGGATTTCTGACGGTAAGTTATCTTTCTTACTTCTCAGTATATGTCTCTACATCTACTCAGTATTTCTATCTGACGTCATCCGGAGCAAACGTTGTTCTCAAAAGTACGGGTAACAATCTGACTTTCTACTCATCTCCTCAAATGGGTGCGCTGGAAGTCGATTGGGAAAACGTCTGGAATGAGCCGGTCAATCTCCTTTTCTTTTCAGCGGTAACCGGAAGTGCATGGGGACTTTTCAAATCTCCCAAATCGAGTGTAAGCGTGTCGTTTATTGGAGCGGTATCAAAATTTGTCAGACAGATTGCTCCGGTGGTAAATTATGTGCCTGTTAGTAACGTTTATCTGACTAATAGCAATTCTTCTATGAAAAATTCCTTCCAGAGTTTAGGGTTAACCCCTTCCGCTGCTCTTAACACCCAACTTGTATCATCTGAAATACCATATGATACATATTCTCAAGTTCCACCATTTTCTAATGCCGGGTTTAAATGGGAACTCAAGGCGGCAAATTATCCGTTTGATACATATTCTCAAGTTCCACCATTTTCTAATGCCGGGTTTAAATGGGAACTCAAGGCGGCAAATTATCCGTTTGATACATATTCTCAAGTTCCACCATTTTCTAATGCCGGGTTTAAATGGGAGCTTAAAGCAGCCAATAAAAGTTATCCAACCACAACCCCCGAAGTTGATCTTGATTATTTAAGGTTTAAATTTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
dd30c2dd11a92c0476f4a0f3dcb4c4d3d51bf59ac5f991e25d152535efda553e
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,3932
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Bacteriophage rm 378 of a thermophilic host organism Hjorleifsdottir,S., Hreggvidsson,G.O., Fridjonsson,O.H., Aevarsson,A. and Kristjansson,J.K. 2013-12-07 — GenBank