Protein

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Genbank accession
AGH07366.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,84
TF
Evidence RBPdetect2
Probability 0,54
Protein sequence
MTIQVTGIIEGPLGSPSPGITIRVVSKISYRDTCRLSTEDHVTTTGGAYDFQLNEGFHKISIRYRGASSFVKLGDVSVSDQTPSPISLINLLESSSPKALVVKLQELADEASESAKSASDDADQVALDKQAVTQLAQQVSDDADQVALDKAAAAQSEANAVQSVGAAQQSASNAAGSATSAAQSEANINAAVTEAQNDIVGGSIFKGSNGEAVEVGDFVKPGITHLRVLVDGKAKVVGINPRESGVVSQLTDLNATINGVTVDFIFNNFTLRFDSIANMLAGIPVRSEPGDICIVLDTSFKHESGSGFTITDFTPLSERGAQAYQVNNMEELRNAVGDRNDNPVRQYGSRHLINNPSSTHPIVDVANFAGQTLGVAAPTGWIHHHYTDGIMHQFDNVGYNNTILVLKNAQNPTRRPDKPSDFVGSGNFISLRYVDPTAGFTRTGFFIDKDMKQVWTGEKGTAVLWQNKQNDGLPAFRLQTTHKHDVILDIMNGLTQSRILQFKNDVGGERFLINSLSELENGVGFQADAGDVWLLSLQDASGRIKISHPIQASDATKNTQLTAPANKAVEVLTPFKPRQYSTATLPSASTFSDCLLSISDSAGKPSPLVYSDGTNWRYMDNTIV
Physico‐chemical
properties
protein length:624 AA
molecular weight: 66830,61520 Da
isoelectric point:5,17680
aromaticity:0,06571
hydropathy:-0,24583

Domains

Domains [InterPro]
DC_2319
STR
98–293
DC_2319
Coil
Unmapped
101–121
Coil
AGH07366.1
1 624
Architecture
STR
STR 98-293 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AGH07366.1
1 624
Domain Start End Length (AA) Confidence
N-terminal 1 343 343 0,9816
Central domain 344 542 200 0,0659
C-terminal 543 624 81 0,9794
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-343
Central
344-542
C-terminal
543-624

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage VBM1
[NCBI] 		754074 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Vibrio parahaemolyticus RIMD 2210633
[NCBI] 		223926 Bacteria > Proteobacteria > Gammaproteobacteria > Vibrionales > Vibrionaceae > Vibrio

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AGH07366.1 [NCBI]
Genbank nucleotide accession
HQ317386.1 [NCBI]
CDS location
range 33868 -> 35742
strand +
CDS
ATGACTATTCAGGTAACTGGCATTATAGAGGGTCCGCTCGGCTCACCATCGCCAGGTATAACAATTCGCGTAGTTTCAAAAATTAGCTACAGAGATACTTGCCGACTATCCACTGAGGACCACGTAACGACAACTGGCGGCGCTTATGATTTTCAGTTAAACGAAGGTTTTCATAAAATATCAATCCGCTACCGTGGCGCATCCTCGTTCGTCAAGCTTGGTGATGTCAGCGTTAGCGACCAAACTCCATCGCCAATTTCGCTAATTAATTTATTGGAATCCTCATCGCCTAAAGCTCTGGTGGTAAAACTGCAGGAACTAGCTGACGAAGCAAGTGAATCAGCCAAAAGCGCATCGGATGACGCTGACCAAGTCGCGCTAGATAAGCAAGCTGTAACTCAGTTAGCACAGCAAGTGTCCGACGACGCCGATCAGGTTGCATTAGATAAAGCAGCAGCTGCACAATCTGAAGCCAATGCAGTACAGAGTGTAGGAGCAGCGCAGCAGAGTGCATCTAATGCAGCAGGCTCAGCCACAAGTGCAGCACAATCAGAAGCGAATATTAACGCAGCTGTAACCGAAGCCCAAAACGACATTGTAGGTGGCTCGATATTTAAGGGGTCGAATGGTGAGGCCGTGGAGGTTGGGGATTTTGTTAAGCCTGGAATCACACACCTTCGTGTTTTGGTTGATGGTAAAGCTAAGGTTGTTGGAATAAATCCTAGAGAAAGTGGCGTTGTATCCCAACTAACTGACTTAAACGCAACAATTAATGGCGTTACAGTAGATTTCATTTTTAATAATTTCACACTTAGATTTGATAGCATCGCAAACATGTTGGCAGGAATTCCTGTAAGGTCTGAGCCGGGCGATATATGCATTGTTCTTGACACTAGCTTTAAACACGAGTCAGGGTCTGGATTTACTATAACTGACTTTACTCCTCTATCAGAAAGAGGTGCGCAAGCATACCAAGTAAATAACATGGAAGAGCTTAGAAATGCTGTTGGGGATAGAAATGATAACCCTGTCAGACAATACGGCAGCAGGCACTTAATAAATAACCCATCAAGCACCCACCCCATAGTTGATGTGGCAAACTTTGCTGGGCAAACATTAGGAGTAGCAGCACCTACTGGTTGGATACACCACCACTACACTGACGGAATCATGCACCAGTTTGATAATGTCGGCTACAATAACACCATACTAGTGCTAAAAAACGCACAAAACCCAACAAGAAGACCAGATAAGCCAAGTGATTTTGTTGGCTCTGGAAACTTTATATCCTTGAGGTATGTTGATCCTACTGCTGGTTTTACTAGGACTGGATTTTTTATAGACAAGGATATGAAACAAGTCTGGACGGGAGAAAAGGGCACTGCTGTATTGTGGCAAAACAAACAAAACGATGGCCTGCCAGCTTTCAGGCTACAAACAACTCATAAGCATGATGTAATTTTAGACATAATGAACGGGTTGACGCAGAGTAGAATCCTTCAGTTTAAAAACGATGTCGGCGGAGAGAGGTTCTTAATTAACTCTCTATCAGAGCTTGAGAACGGTGTAGGTTTCCAAGCTGACGCTGGTGATGTGTGGTTACTGAGTCTACAAGACGCATCTGGAAGGATAAAAATATCCCATCCAATTCAAGCGTCAGATGCAACAAAAAACACGCAGTTAACAGCTCCAGCAAATAAAGCAGTTGAAGTGTTGACTCCTTTTAAACCAAGGCAATACTCAACCGCCACGCTCCCTAGTGCTTCAACTTTTTCTGATTGCTTACTATCAATATCTGACTCTGCCGGGAAGCCATCACCATTGGTTTACTCAGATGGGACTAACTGGAGATACATGGACAATACGATAGTTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
84e51c7b2595bd09635a34d272f310dc219078d5deab3115ab5090ab48d0fe30
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5924
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Vibrio phage VBM1 Henn,M.R., Wharam,S., Gilg,I., Martinez Martinez,J., Wilson,W., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Fitzgerald,M.F., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E.R., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Neiman,D., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Haas,B., Nusbaum,C. and Birren,B. 2011-09-23 — GenBank