Protein

View in Explore
Genbank accession
AGN30021.1 [GenBank]
Protein name
short tail fibers
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence RBPdetect
Probability 0,91
Protein sequence
MSKGTQIFNHVIDDAGTVTVEVAGTAFDGLTGGNDDLQTCLELIQDHALSAIPDYPIASTTVAGLTKLSGDAEVVDPLNNDSAVTPSALDYWFENHATATEAQFGFVKLITTSTIDTVNPTDPVEAAQKHAFTLKTLNYALNNRFHASETKAGVVRLATNAQATTTGTLSTTVAMTPQRVKEMLDVWANTTASNASETTKGLIRLANGTEVNSVLVAENDLAISPYRFNFRTATTTRKAGFYLPDSTVANARTSNDHAVTVGTLSLFSANSSRVGVARLANNLTTNDPLRALSAAMGYKLNNEKIGAAGGTITGTLKVDDIQSVGGTQLMSNGLIESTAMLNMYPVGSVYMSANSTSPATLFGGTWSRLAEGRVLVSEGTYAGRTFANGETGGEYEVTLTEDTMPTHKHAGWGEHHDGDGLGFGIAYQYGRNNRGSGKSDRDNYLYYSSPVGGGHAHNNIQPYYTVYMWERTA
Physico‐chemical
properties
protein length:473 AA
molecular weight: 50305,07890 Da
isoelectric point:5,28804
aromaticity:0,07822
hydropathy:-0,25899

Domains

Domains [InterPro]
DC_0176
STR
1–450
DC_0176
SSF88874
STR
337–471
SSF88874
IPR053827
ATT
343–472
IPR053827
IPR044916
STR
371–463
IPR044916
AGN30021.1
1 473
Architecture
STR
ATT
STR 1-342 | ATT 343-472 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage nt-1
[NCBI] 		115992 Uroviricota > Caudoviricetes > Pantevenvirales > Mylasvirus > Mylasvirus persius
Host Vibrio natriegens
[NCBI] 		691 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AGN30021.1 [NCBI]
Genbank nucleotide accession
HQ317393.2 [NCBI]
CDS location
range 129024 -> 130445
strand +
CDS
ATGAGTAAAGGAACTCAAATTTTCAACCACGTGATTGACGACGCTGGGACAGTCACGGTAGAAGTTGCGGGCACAGCATTTGACGGGTTGACGGGTGGCAACGATGATCTTCAAACATGTCTTGAGCTTATTCAAGATCACGCACTTTCTGCAATCCCTGACTATCCGATTGCAAGCACAACAGTCGCTGGTCTTACTAAGCTGAGCGGAGACGCTGAAGTCGTAGATCCACTCAACAATGACAGTGCAGTAACACCGAGCGCACTTGATTATTGGTTTGAGAATCACGCTACTGCTACTGAAGCGCAATTCGGGTTTGTCAAGTTGATAACAACGTCAACAATTGACACAGTAAACCCGACTGATCCAGTAGAAGCAGCTCAGAAGCACGCATTCACGCTGAAGACGTTGAACTATGCGTTGAACAATAGATTCCACGCATCTGAGACGAAAGCTGGTGTTGTGCGCCTAGCAACGAATGCACAAGCGACAACGACGGGTACACTGTCAACCACAGTAGCAATGACTCCTCAGCGAGTCAAAGAAATGCTAGATGTATGGGCTAACACAACTGCGTCAAATGCGTCTGAAACTACAAAAGGGTTGATACGCTTAGCAAATGGCACAGAAGTGAACAGCGTTCTTGTAGCTGAAAATGATTTGGCGATATCACCATATCGTTTCAATTTCAGAACAGCAACTACGACTAGAAAAGCAGGATTTTATTTGCCTGATTCTACAGTAGCCAACGCTAGAACGTCGAATGATCATGCTGTTACTGTTGGAACACTTTCATTGTTCAGTGCTAATAGCTCACGTGTCGGTGTTGCTAGACTAGCTAACAATCTTACAACAAATGACCCACTAAGAGCACTAAGTGCAGCAATGGGTTATAAGTTGAATAATGAAAAAATCGGTGCTGCCGGTGGTACTATTACAGGAACGTTAAAGGTAGACGACATTCAATCTGTTGGTGGTACTCAGTTAATGAGCAACGGTCTGATTGAATCGACTGCAATGCTTAACATGTACCCTGTTGGTTCAGTATACATGTCAGCTAATTCAACGTCACCTGCTACATTATTTGGCGGTACGTGGTCTAGATTAGCTGAAGGTAGAGTTCTAGTTTCTGAAGGTACATATGCTGGAAGAACATTTGCTAACGGCGAGACTGGTGGTGAATATGAAGTTACTCTTACTGAAGATACAATGCCAACTCACAAACATGCTGGTTGGGGTGAACATCACGACGGTGATGGTCTAGGATTCGGTATTGCATATCAATACGGTCGAAACAACAGAGGTTCTGGTAAGTCTGACAGAGACAACTATTTGTACTACTCATCTCCAGTGGGTGGTGGACATGCACACAACAACATTCAGCCATACTACACTGTTTACATGTGGGAAAGAACTGCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
fd02d37ea15fa4ff58c7b6bef43c9f7565859d7d52f062af9697d2dbd5a282d8
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7287
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Vibrio phage nt-1 Henn,M.R., Krisch,H.R., Comeau,A., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Fitzgerald,M.F., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E.R., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Neiman,D., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Haas,B., Nusbaum,C. and Birren,B. 2011-09-23 — GenBank