Protein

View in Explore
Genbank accession
XDT01981.1 [GenBank]
Protein name
collagen-like protein
RBP type
TF
Evidence RBPdetect2
Probability 0,94
Protein sequence
MTVSVTGTVVDITGRMDSREWRAWSPVYREGTGGAVVTYREQDVQVVAGALTARLEPGPCFIQNPDGDRWLVTVPDTDTELWPLIAVAVAIPPGTPADELNAAVTAYFDANPVEVGPAGPPNVLEIGTVVSGPTADATITGTSPTQTLNLTLPKGDKGDPGTPGTSGDWATLTNKPAVIAAGADAATARSVISAQASDSDLTAIAALSPANDDVVQRKSGAWTNRTPAQLKTDLGLTKSDVGLGNVDNTSDVNKPISTATQTALNAKQSTSEKNQANGYAGLDASGYVPAALLPSYVDDALEFANVAAFPAAGEAGKIYTALNAGTPADPSRIYRWTGTTYVEISPSPGSTDAVAEGSTNLYYTNARADARITAARGVTLQPYDADLAAIAALASAADKMPYATGPNAWALATLTPFARTILDDPDATSVLNTLGVVSGNAPLVQEYTTATGGVTGAARPAGAKGVLIKKMIGAGGAGGSGAFNSGTGTNRPGGGGGAGGNVVEEHWVPVAQLGTTFDVQVGAKGVGGAAVTATASGNAGTAGGDAVFTSGSFTLRASGGGAGAGGSGSSGVGGTPGPYGDKLGTAGAAGTTSSVPTAALDSPTVNAGVRAWGGAAGGGGGSGISSSGTGNTVAGAGGSTPTAAGGTGGTSTGTAPTANGPLLAGEPGAGGGGGAFNPSNGVGQAGANGVGYGAGGGGGAGAGGSGGVTSGKGGDGGPSYVLLIWYF
Physico‐chemical
properties
protein length:727 AA
molecular weight: 70177,10100 Da
isoelectric point:4,51065
aromaticity:0,05502
hydropathy:-0,04828

Domains

Domains [InterPro]
DC_0836
STR
210–292
DC_0836 DC_0362
XDT01981.1
1 727
Architecture
STR
RBD
STR 210-292 | RBD 310-560 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Mycobacterium phage Maddy2
[NCBI] 		3240400 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Mycobacterium sp.
[NCBI] 		1785 cellular organisms > Bacteria > Bacillati > Actinomycetota > Actinomycetes > Mycobacteriales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XDT01981.1 [NCBI]
Genbank nucleotide accession
PQ115172 [NCBI]
CDS location
range 17695 -> 19878
strand +
CDS
ATGACCGTATCTGTAACTGGCACCGTGGTTGACATCACGGGCCGCATGGATTCTCGCGAATGGCGCGCATGGTCGCCGGTCTACCGCGAGGGCACCGGTGGTGCGGTGGTCACCTACCGCGAACAGGACGTCCAGGTCGTCGCCGGAGCCTTGACTGCGCGCCTGGAGCCGGGGCCGTGCTTCATCCAGAATCCGGACGGTGACCGCTGGCTGGTGACGGTGCCCGACACCGACACTGAGCTGTGGCCGCTGATCGCGGTCGCCGTGGCCATTCCACCGGGAACGCCGGCCGACGAACTGAATGCGGCGGTCACGGCGTATTTCGATGCGAACCCGGTCGAAGTCGGCCCCGCGGGGCCACCTAACGTTCTCGAGATCGGCACTGTGGTTTCTGGTCCGACCGCCGACGCCACCATTACCGGCACCTCACCCACCCAGACGCTGAACCTCACCCTGCCAAAAGGCGACAAGGGCGACCCGGGCACTCCCGGCACGTCTGGAGACTGGGCCACACTGACCAACAAACCTGCCGTCATCGCGGCCGGAGCGGACGCTGCGACCGCCCGCTCGGTGATCAGCGCCCAGGCCTCCGACTCCGACCTGACCGCCATCGCGGCGCTGAGCCCGGCCAATGACGATGTCGTTCAACGCAAGTCCGGCGCCTGGACGAACCGCACTCCGGCGCAGTTGAAGACCGACCTCGGGTTGACCAAGAGTGACGTCGGACTGGGGAACGTCGACAACACCAGCGACGTCAACAAGCCGATCAGCACCGCCACCCAGACCGCCCTGAACGCCAAGCAATCCACCAGCGAGAAGAACCAAGCGAACGGCTACGCCGGCCTCGACGCGTCCGGCTACGTGCCCGCTGCGCTCCTGCCGTCCTACGTCGACGATGCCTTGGAATTCGCCAACGTCGCAGCATTCCCTGCGGCCGGTGAAGCCGGGAAGATCTACACCGCGCTCAACGCCGGCACCCCCGCGGACCCGAGCAGGATCTACCGCTGGACCGGAACGACGTACGTCGAGATCAGCCCGTCGCCCGGCTCCACCGATGCGGTGGCAGAAGGCTCGACCAACCTCTACTACACCAACGCCCGAGCTGACGCCCGGATCACGGCTGCCCGCGGTGTGACCTTGCAGCCCTACGACGCTGACCTCGCGGCGATCGCGGCGCTGGCTTCGGCGGCGGACAAGATGCCCTACGCGACCGGCCCGAACGCATGGGCGCTGGCGACGCTGACGCCCTTCGCCCGAACGATTCTCGATGACCCAGACGCCACGTCTGTGCTCAACACGTTGGGCGTCGTCAGCGGTAACGCGCCGCTGGTGCAGGAGTACACGACCGCCACAGGTGGCGTGACCGGCGCCGCGCGACCCGCCGGGGCCAAGGGCGTGCTGATCAAGAAGATGATCGGCGCGGGTGGGGCAGGCGGCAGCGGTGCCTTCAACTCCGGCACCGGCACCAACCGGCCAGGCGGTGGCGGCGGCGCCGGAGGCAACGTCGTCGAAGAGCACTGGGTTCCCGTCGCACAGCTCGGCACGACATTCGACGTCCAAGTAGGAGCGAAAGGCGTTGGCGGGGCGGCAGTCACCGCTACCGCTTCCGGTAATGCGGGGACTGCCGGTGGCGATGCTGTCTTCACGTCGGGATCGTTCACCCTGCGCGCATCCGGTGGTGGTGCCGGAGCTGGTGGCAGCGGATCCTCCGGCGTCGGCGGCACCCCTGGCCCGTACGGGGACAAACTGGGGACGGCAGGCGCTGCAGGTACCACCAGCTCGGTGCCGACCGCTGCGCTGGACTCACCGACCGTGAACGCGGGTGTCCGCGCCTGGGGAGGGGCTGCCGGTGGCGGCGGTGGTTCGGGCATCTCGTCGTCGGGCACCGGAAACACGGTCGCCGGAGCTGGTGGCTCGACGCCGACTGCGGCCGGCGGCACTGGTGGCACGTCGACCGGTACGGCTCCGACAGCGAACGGCCCTTTGCTCGCGGGAGAACCGGGCGCGGGCGGTGGCGGCGGCGCATTCAACCCGAGCAATGGCGTCGGGCAGGCGGGAGCCAACGGCGTGGGCTACGGAGCCGGTGGTGGCGGCGGCGCCGGGGCCGGCGGCTCCGGCGGCGTCACCTCAGGTAAGGGCGGCGACGGCGGACCGTCCTACGTGCTGCTGATCTGGTACTTCTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
e4fa5ec262b94009054bdf702d32bc655efb37394ddc0aef398202caa4bcfbaa
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7712
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genome sequences of Mycobacterium sp. Elmwood and accompanying phage, isolated from a public swimming pool in Nebraska Hernandez-Velazquez,D., Vasquez,M.K., Petre,R. and Kyndt,J.A. — — GenBank