Protein

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Genbank accession
YP_004324404.1 [GenBank]
Protein name
short tail fiber protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,86
Protein sequence
MSFYQEIRTAKAAAIGTIMPWVGNISDIPDGWIVCDGTQVSAKDFPLLARAIGDTYNLSTTVTQGLINTFANNASTEAGRIPDTYIYSPIDGSGGGATFAVIVADAGTQAGGAPNGVGGTVTVQRLQQGANYEINDVLTIPSGNSGGGSDILITVATVEEGSVSTFGGEFPSYQGEIVLPALINRPLVDMEQDYLGPGSPTGRVFDLDSTSVSEISSFIGVNSDTGVPTSFNDVATDVVFELNERTTAPAGDSGEISYYYSGKLQANTIVTGSGQGNRVMFFGPRKLGRGHIKGHGHGGRIDTIVKDPETQPGEGVIPWSNINYNFDAQVDTSDSDIFIINDNEFQLEYNMSDQLRGRSGFGGGIPGRVIGAINAENPPVNWTPQNVAWTPIKSVLTHPLTHRTFNEGVGLKKGALSGGIAGFNKGPGQREAVDYGQNGQQITQFSNGLTNWYPDLLEYNGDAEAGALADPSAFNTYDTFNSNAGWDFKRTTIGVAASRDIILAHTHDEFDVSFDLSGLRPLNSLNVYVTAPAGNLNLDNARNVGVFQINFNTTQPGMTSVYVIRAY
Physico‐chemical
properties
protein length:567 AA
molecular weight: 60162,65230 Da
isoelectric point:4,49769
aromaticity:0,09171
hydropathy:-0,21764

Domains

Domains [InterPro]
IPR037053
ATT
5–71
IPR037053 DC_0344
SSF88874
STR
7–60
SSF88874
IPR011083
ATT
16–62
IPR011083
YP_004324404.1
1 567
Architecture
ATT
STR
ATT 5-71 | STR 179-567
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Prochlorococcus phage Syn1
[NCBI] 		444861 Uroviricota > Caudoviricetes > Pantevenvirales > Vellamovirus > Vellamovirus syn1
Host Synechococcus sp. WH 8101
[NCBI] 		59932 Bacteria > Cyanobacteria > Oscillatoriophycideae > Chroococcales > Synechococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_004324404.1 [NCBI]
Genbank nucleotide accession
NC_015288.1 [NCBI]
CDS location
range 33243 -> 34946
strand +
CDS
ATGTCTTTCTATCAAGAGATCAGAACCGCAAAGGCAGCTGCCATCGGAACAATCATGCCATGGGTCGGGAATATCTCAGATATTCCTGACGGTTGGATTGTATGCGATGGAACTCAAGTCAGTGCCAAAGACTTTCCATTGCTTGCAAGAGCAATTGGAGACACATACAATCTATCTACTACAGTTACTCAAGGTCTAATCAATACCTTTGCTAACAACGCATCAACAGAAGCAGGAAGAATTCCTGATACGTATATTTACTCACCGATTGATGGTAGTGGTGGTGGTGCAACTTTTGCTGTCATTGTTGCTGATGCAGGAACACAAGCAGGTGGTGCTCCTAATGGTGTTGGTGGAACAGTAACTGTTCAAAGATTACAGCAAGGTGCTAACTATGAAATTAATGATGTTCTAACTATTCCCTCAGGCAACTCTGGTGGTGGATCTGATATTTTAATTACTGTAGCTACTGTTGAAGAGGGATCTGTTTCTACATTTGGTGGAGAGTTTCCTAGTTATCAAGGAGAGATTGTTCTTCCTGCTCTAATCAATAGACCTCTGGTTGATATGGAGCAAGATTATCTTGGACCAGGATCTCCCACTGGTAGAGTGTTTGATCTTGATTCAACTTCTGTATCAGAAATTAGTTCATTTATTGGTGTAAACTCAGACACAGGTGTTCCTACATCATTTAACGATGTTGCTACTGACGTTGTGTTTGAATTAAATGAGAGAACAACAGCACCAGCTGGTGATAGTGGAGAGATTTCATACTACTACAGTGGTAAACTACAGGCAAACACTATTGTCACAGGATCTGGTCAGGGTAATCGTGTTATGTTCTTCGGTCCTAGAAAACTAGGAAGAGGACACATTAAAGGTCATGGTCATGGCGGTAGAATTGATACTATCGTAAAAGATCCTGAAACACAACCAGGAGAAGGTGTGATTCCATGGTCAAACATCAACTACAACTTTGATGCACAGGTTGATACTTCGGATAGCGACATCTTTATCATAAATGATAACGAGTTTCAATTAGAATATAACATGAGTGATCAGTTGAGAGGTAGATCTGGTTTTGGTGGTGGTATCCCTGGACGTGTCATTGGTGCTATTAATGCAGAAAATCCACCAGTTAACTGGACCCCACAAAATGTTGCGTGGACTCCTATCAAATCAGTCTTGACTCATCCACTCACCCATAGAACATTTAACGAGGGTGTTGGTCTAAAGAAAGGTGCATTGTCTGGTGGTATTGCTGGATTTAACAAGGGTCCTGGACAAAGAGAAGCAGTTGACTATGGTCAGAATGGTCAGCAGATAACTCAGTTCAGTAATGGATTGACTAACTGGTATCCAGATCTTCTTGAATATAATGGTGATGCAGAAGCAGGAGCACTAGCAGATCCTTCAGCATTCAATACTTATGATACGTTTAATAGTAATGCTGGTTGGGACTTCAAGAGAACAACTATTGGAGTTGCTGCATCAAGAGATATTATTCTCGCACACACTCATGACGAATTTGATGTATCATTTGATCTTTCTGGTCTAAGACCATTAAATAGTTTGAACGTATATGTTACTGCTCCAGCAGGTAACTTGAATTTAGATAATGCAAGAAACGTTGGTGTATTCCAGATTAACTTCAACACGACTCAACCTGGAATGACTTCAGTATATGTAATCAGAGCATACTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
cb3e1aa0e7817adfd2b2f8abe00a73176331cf242b1000a737c2574e2ee18036
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,3506
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Cyanophage Syn1 Henn,M.R., Sullivan,M.S., Osburne,M.S., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Erlich,R., Young,S.K., Koehrsen,M., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Borenstein,D., Chen,Z., Engels,R., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heiman,D., Hepburn,T., Howarth,C., Jen,D., Larson,L., Lewis,B., Mehta,T., Park,D., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., Walk,T., White,J., Yu,Q., Coleman,M.L., Huang,K.H., Weigele,P.R., DeFrancesco,A.S., Kern,S.E., Thompson,L.R., Fu,R., Hombeck,B., Chisholm,S.W., Haas,B., Nusbaum,C., Galagan,J. and Birren,B. 2011-09-23 — GenBank