Protein

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Genbank accession
QIG63038.1 [GenBank]
Protein name
X-linked retinitis pigmentosa GTPase regulator
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MIPFARILTYGNIREIPYIKQMNLSFSSNVSYSILLSTGDAYVGGYNAYGQLGLGHKSDRPRSLFKIPESDIKLCTNGIGSTIYISHDDKIFLSGDRAIQNNSGTASGYTTFTDISNLFSSINISDIKKIVPENNTFVLLNNGELYGIGLNRYGELGVGSTGYFPLTLIDTDVEDCSITSQNSVYIKKDGTVWGAGRNASYCIKTSTEGGINNENIVRFHRMFSTVSEPILQVRMSTNNTIAYTKSTAYCIGTNSAGAFGDGNTTNTNQNTSGNMITVELPNSCNDYNYFGKVYTMHSGVSMYVDINNRLYSTGNNYNYALGLGTSPQYIGTYTIVPDIICKEHDIIICNYYNGYMQG
Physico‐chemical
properties
protein length:358 AA
molecular weight: 39321,51380 Da
isoelectric point:5,73974
aromaticity:0,11173
hydropathy:-0,23380

Domains

Domains [InterPro]
DC_0433
ATT
1–131
DC_0433 IPR009091
IPR009091
STR
24–221
IPR009091
IPR009091
STR
31–337
IPR009091
IPR051553
Unmapped
35–327
IPR051553
IPR000408
STR
39–88
IPR000408 DC_0433
QIG63038.1
1 358
Architecture
ATT
STR
ATT 1-213 | STR 214-341 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QIG63038.1
1 358
Domain Start End Length (AA) Confidence
N-terminal 1 180 180 0,0182
Central domain 181 347 168 0,3895
C-terminal 348 358 10 0,4618
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-180
Central
181-347
C-terminal
348-358

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage SE_PL
[NCBI] 		2712932 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Salmonella enterica subsp. enterica serovar Typhi
[NCBI] 		90370 Bacteria > Proteobacteria > Gammaproteobacteria > Enterobacteriales > Enterobacteriaceae > Salmonella

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QIG63038.1 [NCBI]
Genbank nucleotide accession
MT001829 [NCBI]
CDS location
range 292585 -> 293661
strand +
CDS
ATGATACCATTTGCTAGGATATTGACATACGGTAATATAAGAGAAATACCATATATCAAACAAATGAATTTAAGTTTTAGTTCTAATGTTTCTTATAGTATTTTATTAAGCACCGGCGATGCCTATGTTGGTGGGTATAACGCATATGGTCAATTGGGGTTGGGTCATAAATCAGATAGACCTAGATCTTTATTTAAAATACCAGAATCGGATATTAAGTTATGTACTAATGGGATTGGAAGTACTATATATATTTCGCATGATGATAAAATATTTTTATCAGGCGATCGAGCAATTCAGAATAACAGTGGTACAGCATCAGGGTATACGACATTTACTGATATCTCTAACTTGTTTAGTTCTATTAATATATCAGATATTAAAAAAATAGTTCCTGAGAATAATACATTTGTATTATTAAACAATGGTGAACTTTATGGTATTGGACTTAATCGTTATGGTGAATTAGGTGTTGGTAGTACTGGATATTTCCCATTGACATTGATAGATACTGATGTTGAAGATTGTTCTATTACTTCACAAAATAGTGTATATATTAAAAAAGACGGGACAGTGTGGGGTGCTGGCAGGAATGCATCATATTGTATAAAAACCAGTACTGAGGGTGGCATTAATAATGAGAATATTGTTCGTTTTCATCGAATGTTTAGTACTGTAAGTGAACCTATACTTCAGGTTAGGATGTCTACTAACAATACGATTGCGTATACTAAGTCAACAGCATATTGTATTGGTACGAATTCAGCCGGGGCATTCGGTGATGGAAATACAACGAATACGAATCAAAATACATCAGGTAATATGATCACCGTGGAATTACCGAATTCATGTAATGATTATAATTATTTTGGTAAAGTATATACAATGCATAGTGGCGTTTCCATGTATGTTGATATTAATAATAGATTATATAGTACTGGAAATAATTATAATTATGCGTTGGGTTTAGGAACATCACCCCAATATATAGGTACATACACTATAGTTCCTGATATAATTTGCAAAGAACATGATATTATTATATGTAATTATTATAATGGATATATGCAGGGATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
c387abb3ed7b7e140dfce77cb43028fa08e83d977c768c2197b9230354925e35
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8488
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50