Protein

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Genbank accession
AFH27115.1 [GenBank]
Protein name
pre-neck appendage protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MINFNQLETLNKCLIDWNVNYSVYPYNGYTINEVLCQFFDAINKGIITINEYTKLISAIMNWIKDEGLKEEVENALDKMIEDGTFDDIINEKLLGDIMERLDEIENINKEQNRAIEKNTNAIAEIDKLVKSYGFVTVNMFGAKGDGETDDTKAFNDAINYCKERNITSLFIPYGNYLTTGLINATGVNLVGMYKPVIPFLEWEYTRPTSQLDHFEKYFKMCKGSVIGSKDNTIFVGGLDCKNIGLFGNRRKENQSGYLQLEGGYGKGVNMTDCFVSGFGGVGVKADYGLISSQFINTTITQCGKEGLYIGKIKGTYTGETNFLTIERCTIYRNESHGILADVMGRGFNIILNDFEFNGEPSDPQRPKPTSVDDMIFGCKLLVSGNGGFSSGAIKFEGNYTEETLGMLYIKNTGGTCQGVDINCNMAYPYNTTELENIGIYLDGWIDRINISNNNMYFAKKLVLNGNQIQSIRTDIEPIHGGDTTGSVAWQVTTENGYNKIVMKRLYEEELFSKNGFITREGYHEDGVTHYPFDKSNTHINGVEIDYDDARNPMVGKILILDGNYVGYVHSVSWTQGVINIRGNRVISRTSGNVKFVDCGGFITRDGTGTKRKMVIDWDGTVVGI
Physico‐chemical
properties
protein length:624 AA
molecular weight: 69809,02850 Da
isoelectric point:4,97366
aromaticity:0,10737
hydropathy:-0,31763

Domains

Domains [InterPro]
DC_0396
ATT
1–195
DC_0396 DC_0525
Coil
Unmapped
94–124
Coil IPR011050
IPR024535
ENZ
134–191
IPR024535
IPR012334
STR
135–503
IPR012334
AFH27115.1
1 624
Architecture
ATT
STR
RBD
ATT 1-195 | STR 196-503 | RBD 504-624
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AFH27115.1
1 624
Domain Start End Length (AA) Confidence
N-terminal 1 147 147 0,9849
Central domain 148 490 344 0,9791
C-terminal 491 624 133 0,7915
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-147
Central
148-490
C-terminal
491-624

Taxonomy

  Name Taxonomy ID Lineage
Phage Clostridium phage phiCPV4
[NCBI] 		1162305 Uroviricota > Caudoviricetes > Guelinviridae > Brucesealvirus CPV4 >
Host Clostridium perfringens
[NCBI] 		1502 cellular organisms > Bacteria > Bacillati > Bacillota > Clostridia > Eubacteriales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AFH27115.1 [NCBI]
Genbank nucleotide accession
JQ729991 [NCBI]
CDS location
range 5948 -> 7822
strand -
CDS
ATGATTAACTTTAATCAACTTGAAACATTAAACAAATGTCTTATAGACTGGAATGTTAACTATTCTGTCTATCCATATAATGGTTACACAATTAACGAAGTCTTATGTCAGTTTTTCGACGCAATTAATAAGGGAATAATAACAATTAATGAATATACTAAATTGATAAGTGCAATCATGAACTGGATTAAAGATGAAGGATTAAAAGAAGAGGTCGAAAATGCACTTGACAAAATGATAGAGGACGGAACTTTCGACGACATTATAAATGAAAAACTTTTAGGCGACATCATGGAAAGACTAGACGAGATAGAAAACATTAATAAGGAACAGAATAGGGCAATAGAAAAAAATACTAATGCCATAGCAGAAATTGACAAACTTGTCAAGTCTTATGGTTTCGTTACTGTCAATATGTTTGGAGCAAAAGGAGACGGAGAGACAGACGACACAAAGGCTTTCAATGACGCCATAAATTATTGCAAAGAAAGAAACATTACAAGCTTGTTTATTCCATATGGAAATTACTTGACAACTGGTTTAATAAATGCTACAGGTGTTAACTTAGTTGGAATGTATAAACCTGTTATCCCTTTCTTAGAATGGGAATACACAAGACCAACATCACAACTTGACCATTTCGAGAAATATTTTAAGATGTGTAAAGGTTCTGTTATTGGTTCAAAGGATAATACAATCTTTGTAGGTGGTTTAGACTGTAAGAATATAGGACTTTTTGGCAATAGAAGAAAAGAAAATCAAAGTGGATATTTACAACTAGAAGGTGGTTACGGAAAAGGTGTAAATATGACCGATTGTTTTGTTAGTGGTTTTGGTGGTGTAGGTGTTAAAGCCGACTATGGATTAATTAGTTCACAATTCATTAACACAACTATAACACAATGTGGTAAAGAGGGTTTATATATAGGTAAGATAAAAGGTACTTACACAGGTGAAACAAACTTCTTGACAATAGAGCGTTGTACTATCTACAGAAACGAAAGTCACGGAATATTAGCAGATGTCATGGGACGTGGTTTCAACATAATATTAAATGACTTTGAGTTTAACGGTGAACCGTCCGACCCTCAAAGACCTAAGCCAACATCTGTTGACGACATGATTTTTGGTTGTAAATTACTGGTGAGTGGTAATGGTGGATTTTCAAGTGGAGCAATAAAGTTTGAAGGAAACTACACAGAGGAAACTTTAGGTATGTTATACATTAAGAATACTGGTGGTACTTGCCAGGGCGTCGACATTAATTGTAATATGGCATATCCTTACAATACCACAGAATTAGAAAACATTGGTATTTATTTAGACGGTTGGATAGATAGAATTAACATATCAAACAATAATATGTATTTCGCTAAAAAATTAGTTTTAAATGGAAACCAAATCCAGTCAATAAGAACAGACATAGAACCAATACATGGTGGAGATACTACTGGAAGTGTGGCATGGCAAGTCACTACAGAAAACGGATATAACAAAATCGTGATGAAACGTTTATATGAAGAAGAACTATTTAGCAAAAATGGTTTCATAACTAGAGAAGGTTACCACGAAGACGGTGTTACACATTACCCATTCGATAAATCAAACACTCATATAAATGGTGTGGAAATTGATTACGACGACGCACGTAACCCAATGGTCGGTAAAATCTTAATACTAGACGGAAACTATGTCGGTTATGTTCATTCAGTTTCATGGACACAAGGCGTTATCAACATACGTGGTAATAGAGTTATCTCACGTACTAGCGGTAATGTTAAGTTTGTTGATTGTGGAGGGTTCATCACTAGAGACGGAACAGGAACAAAAAGAAAAATGGTTATCGACTGGGACGGTACAGTAGTTGGAATATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
7329a8971c33f71096f2681ca333d74a82b6c84a74b8ea218ce3e8719942d323
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6483
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50