Protein

View in Explore
Genbank accession
UYD21447.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MQQLHDFLNTSGCTIRRFNLKSVPGDTRGYDGRVYFSFPGETITHGFRAYQYNKYDQVATNECHFLFAGGDGWDASADSGNGDFTNGSGWKGNTHYDGWTARQNTRVTFPTRMRIITDLKTVCVVNFAATGQPFANTYGVGIGAGIGAYKGNKIPWCDGVGGYVNSSGNRYRTMFGSMYRSSGSTYYYRQMAGACLIPESPMFDNWNAGDGAKWCPFLSENTLGNQGVPSTRVVQDFMSRTANSNSKLGVYTSIAPYIYFEPSLTTVLLPCATCLVDKIDGTLRSVPVVDFQGVKFLNPKYVGQGEQLTHNNVKYRVVQDIAERDGSSYIGHHFALAIRESSW
Physico‐chemical
properties
protein length:343 AA
molecular weight: 37913,91450 Da
isoelectric point:8,52486
aromaticity:0,13411
hydropathy:-0,37493

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
UYD21447.1
1 343
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,0713
Central domain 11 209 200 0,0070
C-terminal 210 343 133 0,9977
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-209
C-terminal
210-343

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage 27Ua.3
[NCBI] 		2985666 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Vibrio parahaemolyticus
[NCBI] 		670 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
UYD21447.1 [NCBI]
Genbank nucleotide accession
OP547477 [NCBI]
CDS location
range 53335 -> 54366
strand +
CDS
ATGCAACAACTGCATGATTTCCTAAATACCAGTGGTTGCACAATCCGCCGCTTTAACTTGAAAAGCGTGCCCGGCGACACGAGGGGATACGACGGGCGTGTGTACTTTAGTTTTCCCGGAGAGACTATCACGCATGGTTTTCGAGCGTACCAGTATAATAAATACGACCAAGTAGCTACGAACGAGTGCCACTTCCTGTTTGCGGGGGGAGATGGTTGGGATGCTTCAGCCGATTCCGGGAACGGTGATTTTACTAATGGCAGTGGTTGGAAAGGAAATACGCATTACGATGGGTGGACCGCTCGCCAGAACACGCGTGTAACCTTCCCAACACGTATGCGCATCATAACGGATTTGAAAACTGTATGCGTCGTCAACTTTGCAGCAACTGGACAACCCTTCGCAAATACCTATGGGGTAGGTATTGGTGCGGGTATCGGTGCATACAAGGGTAATAAGATTCCTTGGTGTGACGGTGTCGGTGGTTACGTTAACTCCAGTGGTAACAGGTATCGTACAATGTTTGGATCGATGTATAGATCGTCGGGCTCAACGTATTACTACCGCCAAATGGCGGGTGCCTGCCTAATCCCTGAGAGCCCAATGTTTGATAACTGGAATGCGGGAGACGGAGCTAAGTGGTGTCCGTTCCTGTCGGAGAATACACTGGGTAATCAGGGGGTGCCTAGCACGCGAGTTGTCCAAGATTTCATGAGTAGGACTGCCAACAGCAACTCCAAGCTGGGTGTTTACACGAGTATTGCCCCCTACATCTACTTCGAGCCCTCACTGACTACAGTGCTCTTACCGTGCGCTACGTGCCTTGTCGACAAGATTGACGGTACGCTCCGCTCGGTGCCCGTCGTTGACTTCCAAGGGGTTAAGTTCCTTAATCCTAAATACGTGGGGCAAGGTGAGCAGCTTACCCACAATAATGTCAAGTATCGAGTGGTGCAGGACATCGCGGAGCGAGACGGCAGTAGTTACATAGGGCATCACTTTGCCCTCGCTATTCGGGAGAGCTCATGGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
987561ba24f0ee8e22534d4328ede13fb8c0bd47e0998b9f7dca6694cf29de42
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,4717
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Coastal water bacteriophages infect various sets of Vibrio parahaemolyticus sequence types Brossard Stoos,K.A., Ren,J., Shields-Cutler,R.R., Sams,K.L., Caldwell,S., Ho,M.B., Rivara,G., Whistler,C.A., Jones,S.H., Wiedmann,M., DeMent,J., Getchell,R.G. and Marquis,H. 2022-12-19 — GenBank