Protein

View in Explore
Genbank accession
BDD79546.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MAYDYLEAYALSNIWCAPYQDRQAILELARMTPVGGAFNYFKVQNTTVNLPLAKTRMHVYSIGQVDPLLLGIVPKWTWNTFADACNKKNFICDLYANSGLQMPRTQSWYMVTENHNLIVAVPQLSRIAINLDTDPLFLRVYSNAYYRSQAATTNSSIVYVEGRTPLNSDQIIALQQDLINYQAKPGVAYAFVNGYKVSQIDPYTVNVGDVVEFVYDASIYKVVDFKMTDLRSFTSLLDIKAKYLLHYPGNVNEIDYEDDIDVFVMNPTGTGRWTGVYYHRNAGDSLRNVTHKDYSVVPAYINAFCQDQGWDPMACSLRLHIRNGGWERSLVFENNRIHELYKLSDANILGAMLGVNSNLSNFRADTLEASTYAAIMGAQVPVLDKATVESALGYNAISKVLGDTPVPTFMSSNQLVATAPYGLQAKSTGYEYDANGYLLGYASHQVGSTYVCSQTGATMVEMISGIANNALDEVYGARTTTLDPAVDYRMYVCPITNGQPTNVWTDVTGSAQYAVQNNVLTWLIDTTKFYTLVRGDRYFLGYSLDLTTTDGLLEFSLSHRQTRNGVTSNWIMQIPMGELDLWVNGKSLVERVDYFVNFPQVMIVNKSFLNVGSPTQHVVVRFTGFCNSDFTRTPQDDKGFVQWGTLSNNNRFDIRDDKVLRIQVNGKTLPRSALTFQEGTAGVSVPNALNGTPYLVRDIVVPLRGLTTTPTYTMRAASIVIDEAVSAYMSQYFDMPGNDGEDQIEQLYQIFSPFCCKLIYDMNAGTLDDPRMYQQYSDAVVRSLCAPYEYLLKMDPTQPACAVDPNFVVIQPHNLNTVIPMSIYHYRFLQRAVNLYLNGLVNLSGAVSIETYTGGT
Physico‐chemical
properties
protein length:856 AA
molecular weight: 95796,38050 Da
isoelectric point:5,17612
aromaticity:0,11565
hydropathy:-0,11904

Domains

Domains [InterPro]
IPR055617
STR
4–850
IPR055617
BDD79546.1
1 856
Architecture
STR
STR 4-850 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
BDD79546.1
1 856
Domain Start End Length (AA) Confidence
N-terminal 1 72 72 0,5848
Central domain 73 273 202 0,5723
C-terminal 274 856 582 0,3141
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-72
Central
73-273
C-terminal
274-856

Taxonomy

  Name Taxonomy ID Lineage
Phage Burkholderia phage FLC9
[NCBI] 		2906467 No lineage information
Host Burkholderia glumae
[NCBI] 		337 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Betaproteobacteria > Burkholderiales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
BDD79546.1 [NCBI]
Genbank nucleotide accession
LC667451 [NCBI]
CDS location
range 21504 -> 24074
strand -
CDS
ATGGCTTACGATTACCTCGAAGCTTATGCCCTGTCAAACATCTGGTGCGCTCCCTACCAAGACCGACAAGCGATCCTGGAACTGGCTCGCATGACGCCTGTGGGGGGAGCGTTCAACTACTTCAAGGTTCAGAACACCACGGTCAACCTACCGCTCGCCAAGACACGCATGCACGTGTACTCGATCGGTCAAGTTGACCCGTTGCTGCTCGGGATCGTACCGAAGTGGACCTGGAACACGTTTGCAGACGCATGCAACAAGAAGAACTTCATCTGTGACCTGTATGCAAATAGCGGCTTGCAAATGCCGCGCACGCAAAGCTGGTACATGGTCACGGAGAATCACAACCTGATCGTGGCAGTGCCGCAACTGTCGCGTATCGCTATCAATCTGGACACCGATCCGCTGTTCCTGCGAGTGTACAGCAACGCGTACTATCGCTCGCAAGCCGCCACGACCAATAGCTCGATCGTCTACGTCGAGGGCCGCACGCCGCTGAACTCGGACCAGATCATCGCGCTCCAGCAAGACCTGATTAACTATCAAGCCAAGCCGGGGGTAGCGTATGCGTTTGTGAACGGCTACAAGGTGAGTCAGATCGATCCCTACACGGTAAACGTGGGAGATGTGGTCGAGTTCGTCTACGATGCCTCGATCTACAAGGTCGTCGATTTCAAGATGACAGACCTGCGTTCGTTCACTTCGTTGCTGGACATCAAGGCGAAGTACCTGCTGCATTATCCGGGCAATGTGAACGAGATCGATTACGAAGATGACATCGACGTCTTCGTGATGAATCCGACGGGTACGGGCCGGTGGACGGGTGTGTACTATCACCGCAACGCGGGTGACAGTCTGCGCAATGTGACGCACAAGGACTATTCGGTGGTTCCGGCGTACATCAATGCGTTCTGTCAGGATCAAGGCTGGGACCCGATGGCCTGCTCATTGCGCCTGCACATCCGTAACGGCGGTTGGGAGCGCAGCCTCGTCTTCGAGAATAACCGAATCCACGAACTGTACAAGCTCTCTGATGCGAACATCCTGGGAGCGATGCTGGGGGTGAATTCAAACCTGTCGAACTTCCGTGCCGACACGCTCGAAGCATCAACCTACGCCGCGATCATGGGTGCACAAGTCCCGGTGCTTGATAAGGCGACGGTAGAAAGCGCGCTGGGTTACAACGCCATCAGCAAGGTGTTGGGCGATACGCCCGTGCCGACGTTCATGTCGTCGAACCAGCTGGTCGCAACGGCACCGTATGGCTTGCAAGCCAAGTCGACAGGTTACGAGTACGACGCCAACGGCTATCTGCTCGGCTACGCGTCTCATCAGGTGGGCTCGACCTACGTGTGCTCCCAGACGGGTGCCACGATGGTGGAAATGATCTCGGGGATTGCGAACAACGCGCTCGACGAAGTGTACGGGGCCAGGACCACCACGCTTGATCCAGCGGTGGATTACCGGATGTACGTGTGTCCGATCACCAATGGTCAACCCACGAACGTCTGGACGGATGTGACAGGCAGTGCTCAGTACGCCGTGCAAAACAACGTGCTGACGTGGCTGATCGACACCACCAAGTTCTACACCCTGGTGCGCGGGGATCGTTACTTCCTCGGCTATAGCCTGGATTTGACGACCACGGACGGTCTGCTGGAATTCAGTCTCTCGCATCGTCAAACGCGTAACGGCGTGACATCGAACTGGATCATGCAGATCCCGATGGGGGAGCTCGATCTGTGGGTGAATGGCAAGTCACTGGTGGAACGTGTCGATTACTTCGTCAACTTCCCGCAGGTGATGATCGTCAACAAGTCGTTCCTGAATGTAGGCTCACCAACGCAGCACGTGGTGGTTCGCTTCACGGGGTTCTGCAACAGCGACTTCACTCGCACTCCGCAGGACGACAAGGGCTTCGTGCAATGGGGCACGCTGTCGAACAATAACCGGTTCGACATCCGGGATGACAAGGTACTGCGGATTCAGGTGAACGGTAAAACGCTCCCCCGCAGTGCTCTAACGTTCCAGGAAGGCACGGCAGGGGTGAGTGTACCCAATGCCCTGAACGGCACGCCCTACCTCGTACGCGACATCGTAGTGCCTTTGCGAGGCCTGACGACGACACCCACGTACACCATGCGCGCAGCGTCGATTGTGATCGATGAAGCGGTCAGCGCATACATGTCGCAGTATTTCGACATGCCGGGCAATGACGGCGAAGACCAGATCGAACAGCTGTACCAGATCTTCAGTCCGTTTTGCTGCAAGTTGATCTACGACATGAATGCGGGCACGTTGGACGATCCGCGCATGTATCAGCAGTATAGCGATGCGGTGGTGAGGAGTCTGTGTGCCCCGTACGAGTACCTGCTGAAGATGGACCCGACACAACCGGCGTGTGCTGTGGACCCGAACTTCGTCGTCATTCAGCCGCATAACCTGAACACGGTGATCCCGATGTCGATCTACCATTACCGGTTCTTGCAGCGTGCGGTCAACCTTTATCTGAACGGCCTGGTGAATCTCTCCGGCGCTGTCTCGATTGAAACTTACACGGGTGGAACCTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
42d738f849ddb93c6e0fd12c50f30bb294e1d2671ec89237c065d05b73328171
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,2983
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Optimal preservation method of new biocontrol agent Burkholderia jumbophages having a potential suppressing rice seedling rot disease Kanaizuka,A., Sasaki,R., Miyashita,S., Ando,S. and Takahashi,H. 2022-11-19 — GenBank