Protein

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Genbank accession
AGF91533.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,77
TF
Evidence RBPdetect2
Probability 0,93
Protein sequence
MALTQVSSKGIKDATLLNEDVNASAAIAMSKLALSITNSEINASAAIAKSKLASLNIVNADVNSSAAIAKEKLEDFVTGNSNNRLLTATGNTNSLTGESSFTYDGNGMVDIEGTGAAAIQIKTPDSTDGGVYFRTGTTNAGAISYLHNSTLADGVMNFRSGGTTKMVIKGNGRVGINSTNPAGKFHISDTYHFLVTGGNSTTGMKIGNYDGSSYGVLTTRASELRFDIGDNNKMKIDSSGNILCVANGAQSSLAPFFISVIGKNAINYGGDTNDTACLRIEDKGTNNNYYHGIELRTKRGGDVRMYAHDQGDDTADLVFALDGGVSPAEKIRILNTGGITFNGDTAAANALSDYEEGTFTATCDNGVTLHSSQDLCRYTRIGRLVTVNGQVRINDDNNGADFAITNLPFNNADENDGASSTVGAVRLWDFNIPSDTVNIVALVDGSDDNIDFWVNRDNTGADRLNADSNAYVAFTVTYTTS
Physico‐chemical
properties
protein length:481 AA
molecular weight: 50607,98090 Da
isoelectric point:4,69725
aromaticity:0,06861
hydropathy:-0,26050

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AGF91533.1
1 481
Domain Start End Length (AA) Confidence
N-terminal 1 66 66 0,9692
Central domain 67 265 200 0,0920
C-terminal 266 481 215 0,9903
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-66
Central
67-265
C-terminal
266-481

Taxonomy

  Name Taxonomy ID Lineage
Phage Prochlorococcus phage P-RSP2
[NCBI] 		756283 No lineage information
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AGF91533.1 [NCBI]
Genbank nucleotide accession
HQ332139.1 [NCBI]
CDS location
range 9555 -> 11000
strand -
CDS
ATGGCACTCACACAAGTATCATCAAAAGGAATTAAGGACGCAACTCTTCTTAATGAAGATGTAAATGCTAGTGCAGCGATAGCTATGAGCAAATTAGCTCTTTCTATTACTAACTCAGAAATAAATGCTAGTGCAGCAATAGCTAAATCTAAGTTAGCTTCTTTAAATATAGTTAATGCTGACGTAAATTCTAGTGCAGCAATAGCTAAAGAAAAACTTGAAGATTTTGTTACTGGTAATTCAAACAATAGATTACTAACAGCTACTGGAAATACAAATAGTTTAACTGGTGAATCATCCTTTACCTATGATGGTAATGGTATGGTAGATATTGAAGGAACAGGAGCAGCAGCAATACAAATAAAAACTCCTGATTCTACTGATGGAGGGGTATATTTTAGAACTGGTACTACTAATGCTGGTGCTATTTCTTATTTACATAACAGCACTCTTGCTGATGGTGTTATGAATTTTAGAAGTGGTGGAACCACTAAAATGGTAATTAAAGGTAATGGAAGAGTTGGAATAAATAGCACAAATCCAGCAGGTAAATTTCATATTAGTGATACTTACCATTTTCTTGTTACTGGTGGTAATAGCACCACGGGAATGAAGATTGGTAACTATGATGGTTCATCTTACGGTGTTTTAACTACAAGAGCTTCAGAGTTAAGGTTTGATATTGGCGACAATAACAAGATGAAAATAGATTCGTCTGGAAATATTTTATGTGTAGCAAATGGTGCTCAATCTTCACTTGCACCATTTTTTATTTCAGTTATAGGTAAAAATGCCATAAATTATGGTGGTGATACTAATGACACTGCTTGCTTAAGAATTGAAGATAAAGGTACTAACAATAATTATTATCATGGTATTGAACTTAGAACAAAACGAGGTGGCGATGTCAGAATGTATGCTCATGACCAAGGTGACGATACAGCTGATTTAGTATTTGCTCTTGATGGTGGTGTATCACCAGCAGAAAAAATACGTATACTAAATACTGGTGGTATAACCTTTAACGGAGACACCGCAGCAGCCAACGCACTTTCGGACTATGAAGAAGGTACATTCACTGCTACGTGTGACAATGGTGTAACGTTACATTCTAGTCAAGATCTTTGTAGATATACAAGAATAGGAAGACTAGTCACAGTAAATGGTCAAGTACGCATTAATGATGATAATAATGGTGCTGACTTTGCTATCACTAACTTGCCTTTTAATAATGCGGATGAAAATGATGGTGCTTCCAGTACAGTAGGTGCAGTAAGACTATGGGATTTTAATATACCGTCAGATACTGTTAATATAGTTGCTTTGGTTGATGGAAGTGATGATAACATTGATTTTTGGGTTAATCGAGATAATACAGGTGCAGACCGTCTAAATGCCGATAGTAATGCTTATGTGGCATTTACTGTAACTTACACTACTTCGTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
69947fbf211fb36863ae0724f404e23e37410170b5980df30eca80d9f936726f
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7215
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Prochlorococcus phage P-RSP2 Henn,M.R., Sullivan,M.S., Osburne,M.S., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E.R., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Yu,Q., Coleman,M.L., Huang,K.H., Weigele,P.R., DeFrancesco,A.S., Kern,S.E., Thompson,L.R., Fu,R., Hombeck,B., Chisholm,S.W., Haas,B., Nusbaum,C. and Birren,B. 2011-09-23 — GenBank