Protein

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Genbank accession
XHH62961.1 [GenBank]
Protein name
receptor binding tail protein
RBP type
TSP
Evidence DepoScope
Probability 0,97
TSP
Evidence RBPdetect
Probability 0,89
Protein sequence
MGFFAGKYSDGKTVLSLNTESGGDINRHYSPNANSIFHSDMPFVLVDGTYEAGLGNAGNGFFVCQMPSDIINIKSNDPGRVILTAIEINGTHRAFLNGTQSKVGQTIVATQADPFRSFASVSQTSGFAFGNSLASGTYNYNPSIGHEESISRSGTGGTTLHSTYHGIVRPGAGAPVGVTVAEAFAQLGFPTNSSTVPVDGNNPYYWDPGWMSPLGAAHRGHDWFYVCNSNIRGYGGVRQGLPGNVNTMYHDGGNRFVCRGSTTNLANQSGNSTVIQDWYNITPTKVIWYVLNLRYSNGGMNISGNPFTGSDILISPSNFIIKGVSLPNTGYKFINQNAFGNLGYRPDMEYIGNNAAYTGVFGDTTARCELVGSSNGGLWSPVDYGGAKSQISIYKFGAGKQWYVNSNNNTIGNEHGVVWGPSAVPLRLFGGNVGSSYMGDDITPSYPGTGDRYVGLSTIGLGIPGGNATVILTTEVISGNLNCAGVPANTWNNGVFQVQGRRAYSYSNGDAIFHQILTLPVGYLVPFHTTSAFRYTPNNALSRNSFIYTAKNLGNGNVELGVVMHVSLGSAVFLPRLRVTVQRLT
Physico‐chemical
properties
protein length:585 AA
molecular weight: 62356,65870 Da
isoelectric point:8,42300
aromaticity:0,11282
hydropathy:-0,17162

Domains

Domains [InterPro]
IPR059609
RBD
1–585
IPR059609
XHH62961.1
1 585
Architecture
RBD
RBD 1-585
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XHH62961.1
1 585
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,0470
Central domain 11 225 216 0,4978
C-terminal 226 585 359 0,7612
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-225
C-terminal
226-585

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage vB_Si_CECAV_FGS017
[NCBI] 		3237253 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Salmonella enterica subsp. enterica serovar Infantis
[NCBI] 		595 Pseudomonadota > Gammaproteobacteria > Enterobacterales > Enterobacteriaceae > Salmonella > Salmonella enterica

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XHH62961.1 [NCBI]
Genbank nucleotide accession
PP429239 [NCBI]
CDS location
range 106542 -> 108299
strand -
CDS
ATGGGTTTTTTCGCTGGAAAGTATAGCGATGGTAAGACCGTACTATCTTTAAATACTGAATCTGGGGGTGACATTAATCGTCACTATAGTCCAAATGCCAATAGTATTTTTCATAGTGATATGCCATTTGTCCTAGTTGATGGTACTTACGAGGCTGGGTTAGGTAATGCCGGAAATGGGTTTTTTGTATGTCAGATGCCCTCTGACATAATAAATATTAAATCCAACGACCCAGGTAGAGTTATACTAACTGCTATTGAGATTAATGGTACTCATAGGGCTTTTCTTAATGGTACCCAGAGTAAAGTTGGTCAAACTATAGTTGCTACTCAAGCAGACCCCTTTAGATCTTTTGCTAGTGTTTCTCAAACCAGTGGATTTGCATTTGGTAATAGTCTAGCATCTGGAACTTATAATTATAACCCATCGATAGGGCACGAAGAATCTATCTCTAGGAGTGGCACAGGTGGTACTACGTTACATAGTACCTACCACGGTATAGTTAGGCCCGGTGCGGGAGCTCCTGTAGGTGTTACTGTTGCAGAAGCCTTTGCACAATTAGGTTTTCCTACTAATAGTAGCACAGTACCTGTAGATGGCAATAACCCATACTATTGGGATCCTGGATGGATGTCACCCCTAGGAGCAGCACATAGAGGGCATGATTGGTTTTATGTTTGCAATTCTAATATACGTGGGTATGGTGGGGTTAGACAAGGACTCCCAGGTAATGTAAATACTATGTACCACGACGGCGGGAACAGATTTGTTTGTAGGGGATCTACTACTAATCTGGCCAATCAGTCTGGTAACTCTACAGTAATACAGGATTGGTATAATATAACTCCTACTAAGGTTATTTGGTATGTTCTTAATTTAAGATACTCGAATGGTGGTATGAATATTTCCGGTAACCCCTTTACTGGTTCTGATATTCTTATATCTCCTTCTAATTTTATAATTAAAGGGGTAAGTCTCCCTAATACCGGGTATAAATTTATAAATCAGAATGCTTTTGGTAACCTAGGTTACCGTCCTGATATGGAGTATATAGGGAATAACGCAGCGTATACTGGAGTTTTTGGGGATACCACTGCAAGGTGTGAACTTGTAGGATCTAGTAATGGGGGTTTGTGGTCTCCTGTAGATTATGGAGGGGCTAAATCTCAAATTAGTATTTATAAATTTGGGGCAGGTAAACAATGGTATGTAAACTCAAATAATAATACTATTGGTAATGAACATGGGGTTGTTTGGGGACCCTCAGCAGTTCCACTGCGACTTTTTGGTGGAAATGTAGGTAGTTCTTATATGGGAGATGATATTACTCCCAGCTACCCAGGAACTGGGGATAGATACGTTGGTTTATCCACTATTGGGCTAGGTATACCGGGTGGCAATGCTACAGTAATTCTTACCACTGAAGTTATATCAGGTAACCTTAACTGTGCAGGTGTTCCTGCTAATACATGGAATAACGGTGTGTTTCAAGTGCAAGGAAGAAGAGCATATAGCTATAGTAATGGAGATGCAATATTCCACCAGATTTTAACATTACCAGTAGGGTATTTAGTACCTTTTCATACTACATCTGCTTTTAGGTACACACCTAACAATGCCCTAAGTAGAAATAGTTTTATATATACTGCTAAAAATCTGGGGAATGGAAATGTAGAGTTAGGGGTAGTTATGCACGTAAGTTTAGGTAGTGCAGTTTTCCTACCGAGATTAAGAGTAACAGTTCAACGCCTTACCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
5395186d66e1bc7bce8cf6299d634b60efdbb7d325fc98d50cae2f3775147d53
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,2406
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50