Protein

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Genbank accession
XKC19644.1 [GenBank]
Protein name
putative virion structural protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MENWLVKHAHDNIWCQPANDRRWIVKPERLSMPEGESFGMQVQGYSIRFPEKLKWFHVFQLGGMNHRELGITELFDSWVRLDRIVSHYGTMITLYNELGRTLPLEYSWIRKQPNGNIIVAVEMVESQVDFSTDPLYIRFYNGAFRYTGDYTEQHHSKIIGRVIRDNAERFDAVRKFEELRTMPGEPIAYVNGYEVDILTVDDIKLWDYVEIVYDGLIESIHYFPMSELQSFHSTVDNKRKFLLHPPRQMDTIHFINDIDLSVLKDNKGLYFHQNQSEAFRQVTHNDYSVLVNRFSQYIVQMDDWYDLNELKVKMVVRRSGMDRPLTFNHNRIHELYKMTDDQIVDAMAGMNSNVDEWRAANLEGAAYNRIMAAKYATVTNELCTEAYGYNAVARYAADTPTKTHLAGGEVVATLPPLLARNCTVYEYDSDGVLLGYYNWTSNVDEDYTCKNSETALVEAIEGQATKQPDITFDAKDYTCRPGFNYRFYTNQLKSGTPTDIFEDVTGTDAYSIDTDGKVIWNIDQTRRMPVIWCDSNFLSYGFEEDMFDGHAKFTIDYWLDDDDYKPLLLEPETLEIWMNGHILVPGIDYFVKWPQVVVCNKTYLEDGTNRHKPWFDIRCRGLSDKLRMPKTGFVVNNLISNNAYFDVRDDKVVQISIGGGVRHRSDVVFREDTALGVPEMVNGMPFMVNDPTVPLRELVSKNTYEMRDSSRDLDGRIEDYLTNFIPTPENIEHNPIPQVYELFSPILNKVIHDMINGDLMPEADDQLYYISTRQFDELMKEYMYLLDYEPVLQGVDLRYVSVHPHDGNDYIELEPIQMTMVERINDRYLNNKVIINKLLRIKV
Physico‐chemical
properties
protein length:843 AA
molecular weight: 98352,97820 Da
isoelectric point:4,93808
aromaticity:0,11862
hydropathy:-0,44389

Domains

Domains [InterPro]
IPR055617
STR
2–842
IPR055617
XKC19644.1
1 843
Architecture
STR
STR 2-842 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XKC19644.1
1 843
Domain Start End Length (AA) Confidence
N-terminal 1 148 148 0,8251
Central domain 149 831 684 0,6902
C-terminal 832 843 11 0,7001
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-148
Central
149-831
C-terminal
832-843

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage pVp-JHP1101
[NCBI] 		3374749 No lineage information
Host Vibrio parahaemolyticus SNUVpS-1
[NCBI] 		1234128 Pseudomonadota > Gammaproteobacteria > Vibrionales > Vibrionaceae > Vibrio > Vibrio parahaemolyticus

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XKC19644.1 [NCBI]
Genbank nucleotide accession
PQ451753 [NCBI]
CDS location
range 162919 -> 165450
strand +
CDS
ATGGAAAACTGGCTTGTTAAACACGCCCACGATAACATCTGGTGTCAACCTGCCAACGACAGGCGTTGGATTGTCAAGCCAGAACGTTTATCGATGCCTGAGGGTGAGTCGTTTGGCATGCAAGTTCAAGGTTACTCAATCCGTTTCCCTGAGAAACTAAAATGGTTCCACGTATTCCAACTAGGTGGTATGAATCACCGTGAGTTGGGTATCACTGAACTGTTTGATTCTTGGGTGAGACTGGATCGCATTGTATCGCATTACGGTACAATGATTACCTTGTACAACGAACTTGGACGTACGCTACCTTTAGAGTACTCTTGGATTCGTAAGCAACCAAATGGCAACATCATTGTTGCAGTAGAAATGGTAGAGAGCCAAGTCGACTTTTCAACCGACCCACTTTATATTCGTTTCTACAATGGCGCATTCCGCTACACTGGGGATTACACTGAGCAACATCATAGCAAAATCATTGGTCGCGTTATTCGCGATAATGCCGAACGCTTTGATGCCGTACGTAAGTTTGAAGAACTACGTACAATGCCGGGTGAACCTATCGCTTATGTCAATGGTTACGAAGTTGACATCCTCACAGTCGATGATATCAAACTGTGGGACTACGTGGAAATTGTCTACGACGGGTTGATTGAATCTATTCATTACTTCCCAATGTCGGAGTTGCAGTCGTTCCATAGTACGGTTGATAACAAACGTAAGTTCTTGTTACATCCGCCGCGTCAGATGGATACAATCCATTTCATTAACGATATTGATTTATCGGTATTGAAAGATAACAAAGGTTTGTACTTCCATCAGAACCAGTCAGAAGCGTTCCGTCAAGTTACGCATAATGACTACAGCGTGTTAGTCAATCGTTTCAGTCAGTACATTGTTCAGATGGATGATTGGTACGACTTGAATGAGTTGAAAGTTAAAATGGTTGTTCGCCGTTCTGGCATGGATAGACCATTGACCTTTAACCATAACCGCATTCATGAACTGTACAAAATGACAGACGATCAGATCGTTGATGCAATGGCAGGCATGAACTCTAACGTGGACGAGTGGCGCGCTGCTAACCTTGAGGGTGCAGCATACAACCGAATCATGGCGGCTAAATACGCAACAGTTACCAATGAGCTTTGTACTGAAGCTTACGGTTACAATGCAGTTGCACGTTACGCGGCAGATACACCGACTAAGACGCATCTGGCAGGCGGTGAGGTAGTGGCAACACTTCCACCACTTCTAGCTCGTAACTGTACGGTCTATGAATACGATTCAGATGGCGTACTGTTGGGTTACTACAACTGGACAAGTAACGTTGATGAGGACTACACCTGTAAGAACTCAGAGACTGCACTTGTAGAAGCAATCGAGGGTCAAGCGACTAAACAGCCAGACATCACTTTTGATGCCAAAGACTACACATGTCGTCCGGGATTCAATTACCGTTTCTACACCAATCAATTGAAGAGTGGTACACCTACTGATATCTTCGAAGATGTCACAGGAACTGACGCATACTCAATTGATACGGACGGTAAGGTCATTTGGAACATTGACCAGACTCGACGAATGCCTGTCATCTGGTGTGATAGCAACTTCCTAAGCTACGGCTTTGAAGAAGACATGTTCGACGGACATGCTAAGTTTACTATCGATTACTGGTTGGATGACGATGACTACAAACCTCTACTGCTCGAACCTGAGACGTTAGAGATTTGGATGAATGGTCACATTCTAGTTCCGGGGATTGACTACTTTGTTAAATGGCCTCAAGTGGTAGTTTGTAATAAGACGTATCTTGAAGATGGGACGAATCGACATAAACCATGGTTTGACATTCGTTGCCGTGGATTGTCCGATAAGCTCCGTATGCCAAAGACTGGTTTTGTGGTGAATAACCTCATCAGTAATAATGCGTACTTTGATGTTCGCGATGACAAAGTCGTGCAAATCTCAATTGGTGGCGGCGTAAGACACCGTAGTGATGTGGTCTTCCGTGAAGATACCGCACTGGGTGTTCCTGAGATGGTCAACGGTATGCCATTTATGGTAAACGACCCGACCGTACCGCTACGCGAATTGGTAAGCAAGAACACGTATGAAATGCGTGATAGCTCACGTGACTTGGACGGACGTATTGAAGATTACTTGACTAACTTCATTCCGACGCCGGAGAACATCGAGCATAACCCAATCCCTCAAGTGTATGAACTGTTTAGTCCAATCCTGAATAAAGTTATCCATGACATGATCAATGGTGACTTGATGCCAGAAGCGGATGACCAACTGTATTACATCAGTACACGACAGTTCGACGAGTTGATGAAAGAGTACATGTATCTGCTTGACTATGAGCCAGTGCTGCAAGGCGTTGACTTACGTTACGTATCGGTACATCCGCATGACGGGAACGATTACATCGAACTTGAGCCTATCCAGATGACTATGGTTGAACGAATCAACGACCGTTATTTGAACAACAAAGTCATTATCAACAAACTGCTTCGTATTAAGGTTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
b236ad9ad22adbbde9c17fcd5e711e978f462e509174a349570281546b08008b
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,3162
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome of Vibrio phage pVp-JHP1101 Park,J.H., Kim,S.G. and Park,S.C. 2025-12 — GenBank