Protein

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Genbank accession
YP_009279518.1 [GenBank]
Protein name
tail fiber protein; host specificity
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,53
TF
Evidence RBPdetect2
Probability 0,96
Protein sequence
MGNYCSRCRNFMGGKYTLIINVLNKDLVPVTFIDNDIPGLPSYYKDTLIDYLSLGTASFEFTILKSKNNIIQDYSRFFNDETCFSFEKNGKQYAVFPAGSDGFYETDTEITYKCLSLDRELSLEYVDKFDNSSTHTLQWYIDYFELISNNQIEIGRNDVADYTRVIKYDSQDTKLNRLLSLINNFDAEFEFITKLTNNGAVDKIILNIVKKRDDSGKGGIGAIRDDVELVYGKNVKGIERTYNFEFFNASKVIGKDGTNWNSSEFSYINSDGVEEFYKRKNDDTAFAPLSAQKYPAHLRKDSSDIWLRKNFETEYTTPAQMWGYIVQQFKSYAYPQITYKIKTNSNLVSQALDGKLPIQIGDTVTIEDDNFSNEQGDFGLILRARATEIKSSDSNPETNEITFENFVELQNDLSDDLMTQVNQLVDAATPFRAELSTTNGTQFKNGTGSTTLSAHIFKGSATTETVADSYEWSKDGTVVANAQTITVDASGVVDKAVYSFKATVGGKVVASQSVTITNVNDGTNGRSVTNVSQKWRLTTTTATPTQAWSDAGWLTTQPTTTATNKYLWSITRTTFNLAPLTQDVIEQKAVYGDKGDKGDTGNDGIAGKDGVGIKTTVITYAISTSGTIAPNTGWTSSVPSLVKGQYLWTKTVWNYSDGTSESGYTVTYIAKDGNNGNDGIAGKDGVGLINTTLRYAKSKDGVNKPEGRIVASFTDKFIPARSIIDNLIMTGKQVHLEQGKTYILSAETNGIFTNVHNVEQSNNATIWIVNPSFSTWDIISDTNTAIGTKYTHNRPTGDYEIRINSYEIDNSIWVKNIVFEDGTWTPDIPVANPGEYLWTRTTWFYSDNTNETGFSVAKMGEQGPKGDPGKDGIAGKDGVGIKTTVITYAISTNETTAPATGWTSSVPSLVKGQYLWTKTVWTYTDNSSETGYSVTYISKDGNNGTNGIAGKDGVGIKTTTITYAGSTNGTTAPNTGWTSTVPTVAAGNYLWTKTVWAYTDNTSETGYSVAMMGVKGERGKQIFKSSYESVPHNNFHYWSDLSPAPSIDNPPKIGDTVITPSGNILQIDTVNVGGGGGGGTFGVGDVLGNIKGPSGSNGDPGKVVSDTEPTTRFKGLTWKYSGTTDLTASDGTVIKPNVEYYYNGTHWVINYFSVNNFAAESITSDKIDGKNLTITDGEFISKTTNGPVTTSTEIKDNHISISKTDGTVNTRNDIALDSEQGLAQKFTNINTGFYRTAGINYQGPFTSDSDGNFAQLTPQGTKLSTDVPWTKLSLMNNFNGNIEYAIINGTVYISASGVGVPAMTAGQWKQAAQLPTGSSAIPIRANRIAAGDSGDGLSWALLSNQAGGIFIRCSGNKSPTANLFNATLPYPIG
Physico‐chemical
properties
protein length:1373 AA
molecular weight: 149544,56520 Da
isoelectric point:5,02664
aromaticity:0,10488
hydropathy:-0,42702

Domains

Domains [InterPro]
DC_0690
STR
6–723
DC_0690 DC_1328 DC_1328
IPR010572
ENZ
228–407
IPR010572 DC_1328
YP_009279518.1
1 1373
Architecture
STR
STR
STR 6-723 | STR 780-1349 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009279518.1
1 1373
Domain Start End Length (AA) Confidence
N-terminal 1 702 702 0,9254
Central domain 703 1259 558 0,2576
C-terminal 1260 1373 113 0,9756
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-702
Central
703-1259
C-terminal
1260-1373

Taxonomy

  Name Taxonomy ID Lineage
Phage Lactococcus phage 28201
[NCBI] 		1871678 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Lactococcus lactis
[NCBI] 		1358 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Lactobacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009279518.1 [NCBI]
Genbank nucleotide accession
NC_031013.1 [NCBI]
CDS location
range 28372 -> 32493
strand +
CDS
TTGGGTAACTATTGCTCCAGATGTAGAAATTTCATGGGAGGAAAATATACTTTGATTATTAATGTTTTAAATAAAGACTTAGTTCCAGTAACTTTCATTGATAATGATATTCCCGGTTTACCAAGTTATTACAAAGATACTTTGATTGATTATCTAAGTCTAGGTACAGCATCATTTGAATTTACGATATTAAAATCCAAAAACAACATCATTCAAGACTACTCCAGATTTTTTAATGATGAGACATGCTTCTCTTTCGAGAAAAATGGTAAACAATATGCAGTTTTTCCTGCTGGTTCAGATGGGTTCTATGAAACAGACACAGAAATAACGTATAAATGTTTATCACTAGACCGTGAATTGTCTTTAGAATATGTTGATAAGTTTGATAATTCATCAACTCATACTCTGCAATGGTATATCGATTATTTTGAATTAATTTCAAACAATCAAATTGAAATTGGAAGGAATGATGTTGCTGATTATACAAGAGTCATAAAATATGATTCCCAAGATACAAAACTAAATCGCCTTTTATCTTTAATTAACAACTTTGATGCCGAGTTTGAGTTTATTACAAAACTAACCAATAATGGCGCGGTTGATAAAATAATTTTAAATATCGTTAAAAAACGCGATGATTCAGGCAAAGGTGGTATAGGGGCAATCAGGGATGATGTTGAGCTTGTATATGGAAAGAACGTTAAGGGGATTGAGAGAACTTATAATTTTGAGTTCTTTAATGCGTCTAAAGTTATAGGTAAAGATGGAACTAATTGGAATTCAAGTGAATTTTCCTATATTAATTCAGATGGAGTTGAGGAGTTTTATAAAAGAAAAAATGACGATACAGCATTTGCTCCACTTTCTGCTCAGAAATATCCAGCTCATCTTAGAAAAGACTCTTCAGATATATGGCTTAGGAAAAATTTTGAAACCGAGTATACTACTCCTGCTCAAATGTGGGGATATATTGTTCAACAATTTAAGTCATACGCTTATCCTCAGATTACTTATAAAATCAAAACAAATAGCAATTTAGTATCGCAAGCTCTCGATGGAAAACTTCCTATTCAGATTGGTGATACAGTAACCATTGAAGATGATAATTTTTCAAATGAGCAAGGTGATTTCGGATTAATCTTAAGAGCGAGAGCAACTGAAATTAAATCATCCGATAGTAATCCAGAAACAAACGAAATCACCTTTGAAAATTTCGTTGAATTGCAAAATGATTTATCAGATGACCTAATGACACAAGTTAATCAGTTGGTCGATGCAGCTACTCCGTTTCGAGCAGAACTTAGCACAACTAATGGCACACAGTTCAAAAATGGTACTGGCTCAACAACTTTATCAGCTCATATTTTCAAAGGCTCTGCAACAACTGAAACAGTCGCAGACAGCTACGAATGGTCGAAAGATGGAACGGTTGTTGCGAACGCTCAGACTATCACAGTTGATGCCAGCGGAGTTGTGGATAAAGCAGTTTATAGTTTTAAAGCAACGGTTGGCGGTAAAGTAGTCGCAAGTCAGTCGGTCACTATCACTAATGTGAATGATGGAACAAATGGACGTTCTGTTACAAACGTTTCTCAAAAGTGGCGTTTGACAACGACTACTGCAACACCAACGCAAGCTTGGTCAGACGCAGGTTGGCTCACTACTCAACCAACAACGACAGCTACTAATAAATATCTATGGTCTATCACTCGAACAACTTTCAATTTAGCACCTTTAACGCAAGATGTTATTGAACAAAAAGCAGTTTATGGTGATAAAGGCGATAAGGGAGATACTGGAAATGACGGAATAGCAGGTAAGGACGGTGTTGGAATAAAAACCACTGTTATCACTTACGCTATTTCAACAAGCGGAACGATAGCACCAAACACTGGCTGGACAAGTTCAGTTCCCAGTCTTGTAAAAGGGCAATATCTCTGGACGAAAACAGTTTGGAATTACTCAGACGGAACGAGTGAATCGGGATATACAGTAACTTATATTGCAAAAGACGGAAATAACGGTAATGACGGAATTGCTGGTAAAGATGGCGTTGGGCTTATTAATACCACGCTACGTTATGCAAAGTCAAAAGACGGTGTAAATAAACCTGAAGGTCGTATTGTAGCTTCTTTCACGGATAAGTTCATACCAGCTCGCTCAATCATCGATAACCTCATCATGACTGGTAAACAGGTTCACCTCGAACAAGGTAAGACTTATATCTTATCTGCTGAAACGAACGGCATATTTACAAATGTTCATAATGTGGAACAAAGTAACAACGCTACAATCTGGATTGTTAATCCAAGTTTTAGCACGTGGGATATTATTTCCGACACCAACACAGCTATCGGTACGAAATACACGCACAATCGTCCGACTGGTGATTACGAAATTCGTATTAACAGTTATGAAATAGATAATTCAATTTGGGTTAAAAACATTGTATTTGAAGACGGTACTTGGACTCCTGACATACCAGTGGCCAATCCCGGCGAATACCTCTGGACGAGAACGACATGGTTCTATTCAGATAACACAAATGAAACTGGTTTTTCCGTTGCGAAAATGGGAGAACAAGGACCTAAAGGAGACCCTGGTAAAGACGGAATAGCAGGTAAGGACGGTGTTGGTATTAAAACCACCGTTATTACTTACGCTATTTCAACAAATGAAACAACAGCACCGGCAACTGGCTGGACAAGTTCAGTTCCCAGTCTTGTAAAAGGGCAATATCTCTGGACGAAAACAGTTTGGACATACACGGATAACTCATCTGAAACAGGTTATTCAGTCACTTATATTTCTAAGGATGGTAACAACGGTACTAATGGAATTGCTGGCAAGGACGGCGTTGGTATTAAAACTACGACCATTACATACGCAGGTTCAACAAATGGAACGACAGCACCAAATACTGGTTGGACTTCCACAGTTCCAACAGTTGCAGCAGGTAACTACCTATGGACTAAGACTGTTTGGGCTTATACGGATAATACCAGCGAAACAGGATATTCCGTTGCAATGATGGGGGTTAAAGGTGAACGTGGAAAGCAGATTTTTAAAAGTAGTTACGAGTCTGTACCACATAATAATTTTCATTATTGGTCTGATTTAAGCCCAGCACCGTCCATTGATAATCCTCCAAAAATTGGTGATACCGTAATCACTCCATCTGGCAACATTTTACAAATTGATACTGTAAACGTTGGCGGCGGAGGCGGTGGTGGAACTTTTGGAGTTGGCGATGTACTTGGAAACATCAAAGGACCTTCTGGTAGTAACGGCGACCCAGGTAAAGTTGTTTCTGATACTGAGCCAACGACTCGATTTAAAGGCTTGACTTGGAAGTATTCAGGCACCACTGACCTTACAGCTAGTGATGGAACGGTCATTAAGCCAAATGTTGAGTATTACTATAATGGCACTCATTGGGTGATTAACTATTTTAGCGTCAATAACTTTGCGGCTGAATCGATAACATCAGATAAAATTGATGGTAAAAATTTAACAATTACTGATGGTGAGTTCATTAGCAAAACAACTAATGGTCCAGTTACAACCTCTACTGAAATTAAAGATAATCATATTTCGATTTCAAAGACAGACGGAACTGTTAATACCAGAAATGATATAGCGCTTGATTCTGAACAAGGACTAGCTCAGAAATTTACGAACATTAATACAGGATTCTACAGAACAGCTGGGATTAATTATCAAGGGCCATTCACAAGTGACTCAGATGGAAATTTTGCTCAACTCACACCTCAAGGCACAAAGTTATCTACTGATGTTCCTTGGACCAAGCTTAGTTTGATGAATAATTTTAATGGAAATATTGAGTATGCAATTATCAATGGGACTGTCTATATATCAGCGTCAGGAGTTGGCGTACCAGCAATGACTGCTGGTCAATGGAAGCAAGCGGCTCAATTGCCAACAGGAAGTTCAGCAATTCCAATTAGAGCAAATCGAATTGCAGCAGGAGATAGTGGAGATGGTCTAAGTTGGGCATTACTTTCTAATCAGGCTGGAGGAATATTCATTCGATGCAGTGGTAATAAATCGCCAACAGCTAACTTATTTAATGCCACATTACCATATCCTATCGGATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
ba574277ed2730b07506ab7ee51cb6639f4a1c4ec8e8edf27a85550f39ea1f5e
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7428
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genome sequence of eight prophages isolated from Lactococcus lactis dairy strains Oliveira,J. and van Sinderen,D. 2016-12-29 — GenBank