Protein

View in Explore
Genbank accession
AVR55808.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MNYSNKSITIKLISDLVINEFINIVNIHSPFLNIDFNGYSITLNNASYDIGFSMYNSILGNISKLKINCNNKSINTAVLLQVNSFCRFDNMKGILNCLGNAFALSTNSEAYVFGSTCELSAGSSGYFSKGISSIGSKLLFHTCKFTQNSGALSQSVETSGIIDNYNTTFSGSITGKSQVVGTWTKNGYISA
Physico‐chemical
properties
protein length:191 AA
molecular weight: 20653,10390 Da
isoelectric point:8,56902
aromaticity:0,10995
hydropathy:0,08586

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AVR55808.1
1 191
Domain Start End Length (AA) Confidence
N-terminal 1 19 19 0,2718
Central domain 20 180 162 0,8930
C-terminal 181 191 10 0,6520
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-19
Central
20-180
C-terminal
181-191

Taxonomy

  Name Taxonomy ID Lineage
Phage Campylobacter phage CP39
[NCBI] 		2136799 No lineage information
Host Campylobacter jejuni
[NCBI] 		197 cellular organisms > Bacteria > Pseudomonadati > Campylobacterota > Epsilonproteobacteria > Campylobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AVR55808.1 [NCBI]
Genbank nucleotide accession
MH107028 [NCBI]
CDS location
range 121210 -> 121785
strand -
CDS
ATGAATTATAGTAATAAAAGTATAACTATAAAATTAATTAGTGACTTAGTTATAAATGAATTTATTAATATTGTAAATATACATTCCCCATTTTTAAATATAGATTTTAATGGTTATTCTATTACATTAAATAATGCTTCCTATGATATTGGATTTTCTATGTATAATTCAATCTTAGGAAATATTAGTAAATTAAAAATAAATTGTAATAATAAAAGTATCAATACAGCAGTTTTATTACAAGTTAATTCATTCTGTCGTTTTGACAATATGAAAGGGATATTGAATTGTTTGGGTAACGCATTTGCTTTATCTACTAATTCAGAAGCTTATGTATTTGGTTCAACTTGTGAATTAAGTGCAGGTAGCAGTGGATACTTTTCAAAAGGAATATCATCTATAGGAAGTAAATTGTTATTTCATACTTGTAAATTTACTCAAAATTCAGGAGCGTTAAGCCAAAGTGTTGAAACTTCTGGAATAATAGATAATTATAATACAACATTTTCAGGAAGCATAACTGGTAAGTCTCAAGTTGTGGGTACTTGGACTAAAAATGGATATATTTCAGCTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
f9cc74732d72495e2310389f924d831b0182d42a374063d81a75488cc7218f89
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7249
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation, identification, CP39 whole genome analysis and application of Campylobacter jejuni 11168 phage Song,Z., Huang,J., Tong,Y. and Zhao,F. 2022-02-26 — GenBank