Protein

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Genbank accession
YP_010080765.1 [GenBank]
Protein name
virion structural protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MDSYLNGRKVDVLNPLDLIGVGRHKLEIQVDKKNYWNMFKEQIIVPTPPNNGVNNLFRGGEILPSEVYSDNWYKTWAFYAFGGQSTLERKNDLYPQMTYFKFASNTGIADIVSNQFEREVELKPNTRYTWQFNARKIKGDMFTYFGSSSSVLVDNTKNVTVDGQTGLRLGADLFYNWSDKAVTDGWELHYISFTTASTFPNSKTFLFRTNAGSEWHVKNIQITEGEGPKPFQLSEADRYKYTQYQMDKGHREIYPNFGFYYSEEFDFCCAYKVNIHSGFETVDFNPVEQSYTIRCEVENFAQILNPVKEYYIKVPSSCTFDNSILMNPTTERGGNYLLECKAKGLHLQVFEQPDGDYSRSQNRKVHSNMYDNLNAQMWNVFGGYVYTGELQTYQVEN
Physico‐chemical
properties
protein length:397 AA
molecular weight: 46053,83990 Da
isoelectric point:5,50909
aromaticity:0,15365
hydropathy:-0,61562

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010080765.1
1 397
Domain Start End Length (AA) Confidence
N-terminal 1 246 246 0,2611
Central domain 247 386 141 0,1538
C-terminal 387 397 10 0,9621
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-246
Central
247-386
C-terminal
387-397

Taxonomy

  Name Taxonomy ID Lineage
Phage Lactococcus phage 62403
[NCBI] 		2024339 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Lactococcus lactis
[NCBI] 		1358 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Lactobacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010080765.1 [NCBI]
Genbank nucleotide accession
NC_054997 [NCBI]
CDS location
range 20045 -> 21238
strand +
CDS
ATGGATAGTTATTTAAATGGAAGAAAAGTAGATGTATTAAACCCTTTAGACTTAATCGGAGTAGGTCGCCATAAGTTAGAAATACAAGTAGACAAGAAAAATTATTGGAACATGTTCAAAGAGCAGATTATAGTTCCAACACCACCAAACAACGGTGTAAATAACTTGTTTAGGGGTGGAGAAATTTTGCCTAGTGAGGTGTATAGTGATAACTGGTATAAAACTTGGGCTTTTTATGCTTTTGGTGGTCAAAGTACCCTAGAACGTAAAAATGATTTATACCCTCAAATGACTTATTTCAAGTTTGCAAGCAATACAGGTATTGCTGACATTGTTTCAAATCAGTTTGAAAGAGAAGTAGAACTAAAACCAAACACAAGATACACTTGGCAATTCAACGCTAGAAAAATAAAAGGTGATATGTTTACTTATTTCGGTTCTAGTAGTAGCGTCTTAGTTGATAACACTAAAAATGTCACAGTTGACGGACAAACAGGTTTAAGACTTGGTGCAGACTTGTTTTATAATTGGAGTGATAAAGCAGTCACAGACGGTTGGGAATTACATTATATTTCTTTTACTACTGCTTCAACGTTTCCAAATTCTAAAACATTTCTCTTTAGAACGAATGCAGGTAGTGAATGGCATGTAAAGAATATCCAAATCACAGAGGGCGAAGGACCTAAACCATTTCAATTGTCAGAAGCGGACAGATACAAGTATACACAGTACCAAATGGACAAAGGACACAGAGAAATTTATCCTAACTTTGGTTTTTATTATAGCGAAGAATTTGACTTCTGTTGTGCTTATAAAGTCAATATCCATTCAGGTTTTGAAACTGTTGATTTTAACCCTGTTGAACAGAGTTACACAATTAGATGTGAGGTTGAAAACTTTGCTCAAATATTAAACCCAGTTAAAGAGTATTATATCAAAGTTCCTAGCAGTTGTACTTTTGATAATAGCATACTAATGAACCCTACAACAGAAAGAGGAGGTAATTACTTACTAGAATGTAAAGCTAAAGGACTACACTTACAAGTGTTTGAACAACCTGACGGAGATTATAGCAGAAGCCAAAATAGAAAAGTTCACTCTAATATGTACGATAATCTAAACGCTCAAATGTGGAACGTTTTTGGTGGTTATGTATATACTGGAGAACTACAAACGTACCAAGTAGAAAACTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
05f0b1e0f33daa4a6bec6881c1b0b75224f387198c609700563c3c5c1e3d93c4
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5040
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Comparative genome analysis of members of the virulent lactococcal c2 group phages Oliveira,J. 2024 — GenBank