Protein

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Genbank accession
AAF80787.1 [GenBank]
Protein name
conserved hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MDYDTSGFPLGSKDPRVLYKNAKNFDYAMNDRESVSWVDRFGVSRKTWFGVEQQVNDYLASQGFEPGVLEYVDGSPLTVDRPTQLIQRGDNIYSVKRPASFPVNLTGNWATDQNLLVAQVDRTLQDTLATSAGAGMIGYRERTVADRLNDTANVKDYGAIADGAYHPLSERFATLPDAQAVYPYATALTDTIDWAAYQAAINSGAPHVHAPGGHYVMNRGTLAERDIRYTGDGYATRVDFSLADGSGSCMLTQGELVQIGDLSVSVVKGARTLTFAAAPDLAPGDVVIVYNPANGSWLADRDPYRAGEMWKVHSVSGSTVTIYGNSSSVYLFSEVDVYRMRGVRVSVDQMHFSPSDTYSIAPFKVVFGDGVKVSNYYASDVTLYTGLEVERCFDVSINAVSSPNRSPAVNDEYGITISNCHNFSVYGGYAAATRHAVALGGMDAVCCVPNRHGLIYGMNIEGIDLASDISAGDMHGNADKITYDNCEFRNGVILQGRDATVRNSTVYGVSSTSGEAIYGSEVYGGTYTIENNRFISYGDGASFGIVHISPSSTQREALLIIARNNTFELPNATGSTKVFFLRGRNSPLPISANIDGVHVHMASVAMQCFLFADDSIKSELLSNYLIIDNVYGPFGTSLLYPTTKNANIPTRQMEQSGEVTVTTNGTSTALPASNVSFRYPYSKKPMAVACASGVNGVAFSSLGGQSPVPIVYAVVAASIRPGLVAATSSFTSGERAVVGWRAGIREI
Physico‐chemical
properties
protein length:747 AA
molecular weight: 80340,73360 Da
isoelectric point:5,26348
aromaticity:0,09906
hydropathy:-0,11847

Domains

Domains [InterPro]
DC_1559
ATT
1–173
DC_1559 IPR011050 DC_1729
IPR012334
STR
115–702
IPR012334
IPR049350
STR
252–340
IPR049350 IPR054136
AAF80787.1
1 747
Architecture
ATT
STR
RBD
ATT 1-173 | STR 174-702 | RBD 703-747
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AAF80787.1
1 747
Domain Start End Length (AA) Confidence
N-terminal 1 190 190 0,9946
Central domain 191 646 457 0,9896
C-terminal 647 747 100 0,9686
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-190
Central
191-646
C-terminal
647-747

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage D3
[NCBI] 		2932880 Uroviricota > Caudoviricetes > Detrevirus >
Host Pseudomonas aeruginosa
[NCBI] 		287 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Pseudomonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AAF80787.1 [NCBI]
Genbank nucleotide accession
AF165214 [NCBI]
CDS location
range 18636 -> 20879
strand +
CDS
ATGGACTACGATACCAGCGGTTTCCCGCTCGGCTCGAAAGACCCTCGCGTCTTGTACAAAAACGCCAAGAATTTCGACTATGCGATGAATGATCGCGAAAGCGTTTCGTGGGTTGACCGCTTCGGGGTATCTCGCAAGACTTGGTTCGGTGTCGAGCAGCAGGTAAATGACTACCTAGCATCTCAAGGATTCGAGCCAGGCGTCCTGGAGTACGTCGACGGCTCACCGCTGACCGTAGACCGTCCGACCCAACTGATCCAGCGCGGGGACAACATCTACAGCGTCAAGCGCCCGGCATCGTTCCCCGTCAATCTGACCGGGAACTGGGCGACGGACCAGAACCTCCTGGTTGCCCAGGTTGACCGGACGCTGCAAGACACCCTGGCCACCAGCGCTGGCGCCGGGATGATCGGCTATCGCGAGCGCACCGTAGCCGACCGCTTGAACGACACCGCCAATGTCAAGGACTACGGCGCTATCGCAGATGGGGCGTATCACCCGTTGTCAGAGCGGTTCGCTACGCTCCCCGATGCGCAGGCGGTTTATCCGTACGCCACTGCGCTGACCGACACTATCGACTGGGCGGCGTATCAGGCGGCAATCAACTCCGGGGCGCCGCATGTGCATGCGCCAGGCGGCCACTACGTCATGAATCGCGGAACTCTCGCTGAGCGGGATATTCGGTATACCGGCGATGGCTATGCTACCCGCGTAGATTTCAGCCTCGCAGATGGCTCAGGTAGCTGCATGCTGACGCAGGGTGAGCTTGTGCAAATCGGCGATCTGTCCGTGAGCGTGGTTAAAGGCGCTCGCACGCTGACATTTGCCGCTGCGCCAGACCTGGCTCCGGGCGACGTGGTCATCGTGTACAACCCCGCCAACGGATCTTGGCTGGCTGATCGCGATCCGTATCGCGCTGGCGAGATGTGGAAAGTCCATTCGGTAAGCGGTAGCACTGTCACGATCTACGGAAACAGCTCGTCGGTGTACCTGTTCTCCGAGGTAGACGTATACCGCATGCGCGGCGTTCGCGTGTCTGTCGATCAGATGCACTTTTCGCCGTCTGACACATATTCCATTGCGCCGTTCAAGGTGGTTTTCGGCGATGGAGTTAAGGTTTCCAACTACTACGCTAGCGATGTCACGCTTTACACAGGGCTAGAAGTAGAACGATGCTTTGACGTTTCGATCAATGCGGTTTCAAGCCCGAACAGATCGCCGGCAGTCAATGACGAATATGGGATTACTATCTCAAACTGCCATAACTTCTCGGTTTACGGCGGTTATGCGGCAGCAACCAGGCACGCTGTCGCGCTTGGCGGAATGGACGCTGTGTGCTGCGTTCCTAACCGTCACGGCCTGATATACGGGATGAACATTGAGGGGATCGACTTAGCGTCGGATATCAGCGCGGGAGACATGCACGGGAATGCCGACAAAATCACATACGACAACTGCGAGTTTCGGAATGGGGTAATTCTTCAAGGGCGCGACGCAACTGTTCGTAACAGCACTGTCTACGGAGTATCCAGCACTTCCGGCGAAGCGATCTATGGATCGGAAGTATACGGTGGCACCTACACCATCGAGAATAATCGATTTATCAGCTATGGCGATGGCGCATCGTTTGGCATCGTCCATATATCGCCAAGTTCCACTCAGCGCGAAGCATTGCTGATCATCGCGCGAAACAATACATTCGAGTTGCCGAACGCCACGGGGTCGACGAAAGTGTTTTTCCTGCGTGGACGCAATAGCCCGCTTCCGATTAGCGCAAACATTGACGGAGTACACGTCCATATGGCATCTGTCGCGATGCAATGTTTCCTATTCGCGGACGACAGCATCAAGTCTGAACTTCTTTCTAACTACCTTATTATTGACAATGTTTACGGGCCATTCGGAACATCATTGCTTTACCCGACAACCAAGAATGCGAACATTCCTACGCGTCAGATGGAGCAGAGTGGGGAAGTAACAGTTACCACTAACGGAACTTCAACGGCTCTGCCGGCTTCCAACGTCAGTTTCCGATATCCATACTCTAAGAAGCCAATGGCGGTAGCCTGCGCATCAGGCGTCAACGGGGTAGCATTTTCTAGCCTTGGGGGGCAATCCCCGGTGCCAATTGTGTACGCCGTTGTCGCTGCTTCTATCCGGCCTGGACTGGTTGCTGCAACCTCTTCTTTCACCTCCGGAGAGCGGGCGGTCGTTGGGTGGAGGGCGGGAATCAGGGAGATATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
cd3a579d15b8f821aa7bdb84d9bf8836d3edc412699fcc850eeb1c8dbd60fca2
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8136
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Cloning of the early promoters of Pseudomonas aeruginosa bacteriophage D3: sequence of the immunity region of D3 Farinha,M.A., Allan,B.J., Gertman,E.M., Ronald,S.L. and Kropinski,A.M. 1994 8050993 GenBank
Genetic and sequence analysis of the cos region of the temperate Pseudomonas aeruginosa bacteriophage, D3 Sharp,R., Jansons,I.S., Gertman,E. and Kropinski,A.M. 1996 8921844 GenBank
Transfer RNA genes and their significance to codon usage in the Pseudomonas aeruginosa lamboid bacteriophage D3 Kropinski,A.M. and Sibbald,M.J. 1999 10526403 GenBank
Cloning and analysis of the capsid morphogenesis genes of Pseudomonas aeruginosa bacteriophage D3: another example of protein chain mail? Gilakjan,Z.A. and Kropinski,A.M. 1999 10572124 GenBank
Sequence of the genome of the temperate, serotype-converting, Pseudomonas aeruginosa bacteriophage D3 Kropinski,A.M. 2000 11029426 GenBank
Characterization of the int-att region of Bacteriophage D3, and the attD3 Site on the Pseudomonas aeruginosa genome Kropinski,A.M., Huang,V.Y.-F., Kim,D. and Yung,E. 2000-11 — GenBank