Protein

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Genbank accession
QVW28313.1 [GenBank]
Protein name
short tail fibers protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence RBPdetect
Probability 0,90
Protein sequence
MSTNTLKHISDKSEFKTFDPTGSNFDPSITNVQDALASISAIGVTGNIPSASETEQGIIRLATQQEVIDGTDTFSAVTPATLKGRLDIPTQATETYVGITRYATNAEAIAGTETQAAIVASSLKATIDYTFTNRLATENTTGVLKISTLPAALAGTDDTTAMTPLKTAQAIGAATSALPTYASATQTTEGIVRIATNAEVASGSLTNGVAISPSGLISLTSNTSRRGLVQLATGAEVSAGTDPNKAITPQTLLSRTGNTGRIGLLKTTTTVGSGDSNTALAYNANVISTTGGTINGTLNVNGTLRRNGRDVVTIDQLKDSVPIGTIVMWGGQINNIPAGWAVCDGGNSGEQGFRNVVGSKWGSTGARPDFRGLYPRGANQTNDGGLKEWDANVRIRDAKGNDAKGKPKLGVGCGSYGHGTVQAQQLRFHKHAGGFGEHDNAGAFGNTVRSNFAGTRKGLDWDNRSYFTNEGYEIDGSGSRDSRTTLNSEGLVGNENRPWTMSILFIIKVA
Physico‐chemical
properties
protein length:510 AA
molecular weight: 53060,12260 Da
isoelectric point:6,98224
aromaticity:0,05490
hydropathy:-0,29745

Domains

Domains [InterPro]
DC_0176
STR
1–435
DC_0176
IPR015173
STR
250–308
IPR015173 IPR027448
QVW28313.1
1 510
Architecture
STR
RBD
STR 1-435 | RBD 436-509 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage C6
[NCBI] 		2831681 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QVW28313.1 [NCBI]
Genbank nucleotide accession
MW679410.1 [NCBI]
CDS location
range 89559 -> 91091
strand +
CDS
ATGTCTACAAATACACTAAAACACATAAGTGATAAATCAGAATTTAAAACATTCGACCCTACCGGGTCGAATTTTGACCCCTCTATTACTAATGTCCAGGATGCATTGGCGTCTATTTCCGCTATAGGTGTTACAGGTAATATACCTTCGGCTTCTGAAACAGAACAGGGTATTATTAGATTAGCGACCCAACAAGAAGTTATTGATGGCACTGATACTTTCTCTGCGGTAACTCCGGCCACTTTAAAAGGCCGTTTAGATATTCCTACTCAAGCAACAGAAACTTATGTAGGTATCACCCGTTACGCCACTAATGCTGAAGCCATTGCTGGGACAGAAACCCAGGCTGCAATCGTAGCATCGTCTTTGAAAGCTACTATAGATTATACGTTCACCAATCGTTTAGCCACAGAGAACACTACAGGCGTACTCAAGATTTCAACCCTGCCGGCTGCTCTAGCAGGTACAGACGATACAACGGCAATGACACCTCTGAAAACCGCTCAGGCAATTGGTGCCGCTACATCCGCATTACCGACTTATGCCAGTGCTACTCAAACTACTGAGGGTATTGTTAGAATCGCAACAAATGCCGAAGTGGCAAGTGGGTCGTTAACTAATGGTGTGGCTATTTCTCCATCAGGGCTTATTTCTTTAACTTCTAATACTTCTCGACGTGGACTGGTTCAATTAGCCACTGGAGCTGAAGTTTCAGCCGGAACTGACCCTAATAAAGCTATTACACCTCAAACACTTTTGTCAAGAACAGGTAATACCGGTAGAATAGGCCTTCTTAAAACCACAACTACCGTAGGTTCTGGTGATAGTAATACGGCATTGGCATATAATGCTAACGTTATTTCTACCACAGGCGGCACCATTAATGGTACTTTAAACGTTAACGGTACTTTACGTCGCAATGGGCGTGATGTTGTTACTATCGACCAATTAAAAGATTCTGTCCCTATCGGTACTATTGTTATGTGGGGAGGCCAGATTAATAATATCCCTGCAGGTTGGGCTGTTTGTGATGGTGGTAACTCCGGTGAACAAGGATTCCGAAATGTAGTTGGTAGTAAATGGGGTTCAACCGGCGCTCGTCCTGATTTCCGTGGATTATATCCTCGCGGTGCAAACCAAACTAATGACGGTGGATTAAAAGAATGGGACGCTAACGTCAGAATTAGAGATGCCAAAGGTAATGATGCCAAAGGTAAACCTAAATTAGGTGTAGGTTGTGGTTCATATGGCCATGGTACTGTACAAGCCCAGCAACTTCGTTTCCATAAACACGCCGGCGGCTTTGGTGAACATGACAATGCGGGTGCATTTGGTAATACCGTTCGTTCCAACTTTGCTGGTACTCGTAAAGGCCTGGACTGGGATAACCGTTCTTACTTTACAAACGAAGGATACGAAATTGACGGTTCAGGTTCACGAGATTCAAGAACTACTCTAAACAGCGAAGGGTTGGTTGGTAACGAAAACCGTCCTTGGACTATGTCCATCCTATTCATTATTAAAGTTGCTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
5ec0d8ed6c385d0ce173f9c0bd3946321b2030d46bdaeada2063c1451d2e3d21
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6660
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Biological properties of an Escherichia lytic phage infecting 4 pathogenic Escherichia coli strains Lin,Y. and Zhu,W. 2019-04-18 — GenBank