Protein

View in Explore
Genbank accession
YP_006560960.1 [GenBank]
Protein name
pre-neck appendage protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,90
TSP
Evidence RBPdetect2
Probability 0,93
Protein sequence
MKLDNLITKLHSYFSQKFVSQLENNFEQIKYWTNKSDDSFNEHLTTQKNAHTTDQIKHKTTKGKDVVLSNHENYQDELIEHLVLGHNGDGIQELRASHTSMDAQSFDSLHQRLYHDFLRESNAREELRADLTKKIQRIVNVDDFGGDPTGQKDSTKAFQDALGNGNVQVTMSGGTYLTTGIKMPNNSRLVGQGKDITTIKLMDKTPAENIGITNLKMSGGAENISLESFSFNGNKFRQNKTLKATGGSRSSNIRFAGVTNGYIYNVKSYDALLHCIDVTYANDNYYYEGDGNRVPYALESKHIHIDNCEAYGCGDDGITTHHSRYITISNCYAHTPTGGSNNNGIEIDDGSQYVFLSNNRTKGNFGGLEIKAHSNTSAASGVFVNGHVSIEDTRAYNIRHIGHHRAKTDNKSLTAYDVVLNNCLALNPKYNGVYPGSTPRALLISAYRNVSVNNFTAIGDSDFGKLEGGKLDKKQPAIAIQFMSENISLNNINVRNFKNAEVDIRLFGGDNRPSRVSLNNINIWNSSNNIGIGVGSKIYDTKITNCNLHGNGSGIGLRLTNNHAMISGVTADNYSTSAWIAGEKYDTPPTVGKGGASIASTGSAGVANASAVIASTGGSKAYSNRSFVLGSGANSKSYGSRSGIINSLNSETDKKGHTQLIMNSNRVKSPGNYHVVAGYGSSGNASTSNIKFDLSSYSGNLTLAGQLKQDSADIAELFESQNGLAIDLGTIVTLDGDKIIKAQPNDTPIGVISGTAALVANEKTFHHKDRFLKNEYGVTITNRKQVEFVDDEGNVSFEWRDIPVENPEYNDKIDYQSRSERPEWNVVGLLGQIYTNIEKDVIPGDYINGRAGVGYKDNVNGKGRVMKITSEYTEERGCAIALVLWGAK
Physico‐chemical
properties
protein length:888 AA
molecular weight: 96874,13310 Da
isoelectric point:6,84008
aromaticity:0,07883
hydropathy:-0,54685

Domains

Domains [InterPro]
DC_0125
ATT
1–265
DC_0125 IPR039448 IPR006626 IPR006626 IPR021865
IPR012334
STR
122–592
IPR012334 G3DSA:2.40.300.10
IPR011050
STR
133–526
IPR011050 G3DSA:4.10.80.40
IPR006626
Unmapped
258–280
IPR006626 IPR006626 IPR006626 IPR006626 IPR006626
DC_0616
STR
368–659
DC_0616
YP_006560960.1
1 888
Architecture
ATT
STR
CHP
RBD
ATT 1-265 | STR 266-659 | CHP 660-712 | RBD 713-884 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_006560960.1
1 888
Domain Start End Length (AA) Confidence
N-terminal 1 153 153 0,9937
Central domain 154 615 463 0,9775
C-terminal 616 888 272 0,8309
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-153
Central
154-615
C-terminal
616-888

Taxonomy

  Name Taxonomy ID Lineage
Phage Staphylococcus phage vB_SepiS-phiIPLA5
[NCBI] 		2922988 Uroviricota > Caudoviricetes > Rockefellervirus >
Host Staphylococcus epidermidis
[NCBI] 		1282 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Bacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_006560960.1 [NCBI]
Genbank nucleotide accession
NC_018281 [NCBI]
CDS location
range 15343 -> 18009
strand +
CDS
TTGAAATTAGATAACTTAATTACGAAACTTCACTCGTACTTTAGTCAAAAGTTTGTAAGTCAACTTGAGAATAACTTCGAACAAATAAAATACTGGACTAATAAAAGTGATGATAGCTTTAACGAGCATTTAACCACTCAAAAAAATGCGCATACAACTGATCAAATCAAACACAAAACTACAAAAGGTAAAGATGTTGTATTATCTAATCATGAAAATTATCAAGATGAACTTATTGAACATCTTGTGTTAGGACATAATGGAGATGGAATACAAGAATTAAGAGCAAGTCACACATCAATGGACGCTCAAAGTTTCGATTCTTTACACCAACGTCTATATCACGACTTTTTAAGAGAAAGTAACGCTAGAGAAGAACTAAGAGCCGACTTAACCAAGAAAATACAACGTATTGTTAATGTTGATGATTTCGGAGGAGATCCAACAGGACAAAAAGACAGTACAAAGGCATTTCAAGACGCATTAGGTAACGGCAATGTACAGGTAACTATGAGTGGCGGTACTTACCTTACAACAGGTATTAAAATGCCTAACAACTCTCGTTTGGTAGGACAAGGTAAAGACATTACTACTATTAAGCTAATGGATAAAACACCAGCAGAGAACATAGGTATCACTAACTTAAAAATGAGTGGCGGAGCTGAAAACATTTCTTTAGAAAGTTTTTCGTTCAATGGGAATAAGTTTAGACAAAATAAAACACTTAAAGCTACCGGTGGCTCTCGTTCATCTAACATTAGATTTGCGGGTGTAACTAATGGATATATCTATAACGTTAAATCATATGACGCTTTACTACACTGTATCGATGTAACATATGCAAATGACAATTATTACTACGAAGGCGATGGAAACAGAGTGCCTTACGCATTAGAAAGTAAGCATATTCATATTGATAATTGTGAGGCATATGGTTGCGGAGATGATGGTATCACTACCCATCACTCTCGTTACATTACAATTTCTAATTGTTATGCACATACACCAACAGGTGGAAGTAATAACAATGGTATAGAAATTGACGATGGCTCACAATATGTGTTCTTATCAAACAACAGAACCAAAGGTAACTTCGGTGGTTTAGAAATCAAAGCACACAGTAACACAAGTGCTGCAAGTGGCGTATTCGTTAACGGTCACGTATCAATCGAAGATACAAGAGCTTACAACATTCGACACATCGGTCATCATAGAGCTAAAACGGACAATAAAAGTTTGACTGCTTATGACGTGGTGCTAAATAATTGCTTAGCTTTAAACCCTAAATACAATGGTGTGTATCCAGGCTCAACACCTAGAGCATTATTAATCAGTGCTTATAGAAATGTTTCTGTAAATAACTTTACAGCTATAGGTGATAGTGATTTCGGAAAATTAGAAGGTGGAAAACTAGATAAAAAACAACCAGCAATAGCCATCCAATTCATGTCCGAAAACATCTCGCTTAATAATATTAATGTGCGTAACTTTAAAAATGCAGAAGTAGATATTAGATTATTTGGCGGAGATAATAGACCGTCTAGAGTATCACTAAATAACATAAATATTTGGAATTCATCTAACAATATCGGTATCGGTGTTGGAAGTAAAATATACGACACTAAAATAACTAATTGTAACTTACACGGCAATGGTTCAGGTATAGGATTACGTTTGACAAATAACCACGCTATGATTAGCGGCGTCACAGCTGATAATTATTCAACTTCTGCATGGATAGCAGGAGAAAAGTACGACACACCACCTACAGTAGGAAAAGGCGGCGCTAGTATAGCGTCTACAGGAAGTGCTGGTGTAGCAAACGCTAGTGCAGTTATTGCATCTACAGGTGGTTCGAAAGCATACAGTAATCGTAGCTTTGTATTAGGTTCTGGTGCTAACTCCAAATCTTATGGTTCACGTAGCGGTATTATCAATTCACTTAATTCTGAAACTGATAAAAAAGGCCATACACAACTGATTATGAATAGTAATCGTGTTAAGTCACCTGGTAACTATCATGTTGTCGCTGGATATGGTTCTAGTGGTAATGCTTCTACATCTAACATTAAATTTGATTTAAGCTCTTATTCAGGAAACTTAACTTTAGCCGGTCAACTTAAACAAGATAGTGCCGATATCGCAGAGTTATTTGAGTCACAAAATGGATTAGCAATCGATTTAGGAACTATCGTTACATTAGACGGCGATAAGATAATAAAAGCGCAACCTAATGACACACCAATTGGCGTTATATCTGGAACTGCCGCGTTGGTAGCGAACGAAAAAACGTTCCACCACAAAGATAGATTTCTTAAAAACGAATATGGTGTGACTATCACGAATAGAAAACAAGTTGAATTTGTAGATGATGAGGGCAACGTTTCTTTCGAATGGCGTGACATACCAGTAGAAAACCCTGAATATAACGACAAAATCGATTATCAATCACGTTCAGAAAGACCTGAATGGAATGTAGTCGGATTATTAGGTCAAATCTACACAAACATTGAGAAAGACGTTATACCAGGCGACTATATCAACGGTAGAGCAGGTGTAGGATATAAAGATAATGTGAATGGTAAAGGCAGAGTCATGAAGATAACTTCTGAATACACTGAAGAACGTGGCTGTGCAATAGCATTAGTATTGTGGGGTGCTAAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
c3d079a702d3dae67b82dadaaba4d70abe9eba3483938ddc58a0729453284f2c
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7803
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50