Protein

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Genbank accession
AQT25386.1 [GenBank]
Protein name
tail knob protein
RBP type
TF
Evidence RBPdetect
Probability 0,84
Protein sequence
MADRKLTHFKFFYNTPLTDYQNTIHFSSNNERDNYFLNENHFNAIDYKNIPFNFIRDRNMVNLEQMSWQDAQGINYCTFKSDFENRRYYAFVNQIEYVNDHVTRMYLVIDTVMTYTQGNVLSNVQNAFIERQHLPREVYNYLLPSLRNNDDVIKASNKYYLNNYLEQFGGNLVLFQSSADLSKKFGTKKEPNLESSKGITYDYITSPVNLYVMNRKDFNEFMDKMSKYPWITQNFQKIILIPATFININDLESVKTQEDIKGLMTLKNEKLSNEWELKELRVPFERLQYMINANQDELKHLVRNEYLTIEIYSWNGDSLLLDAGKITEKTGVKLRTKSIIGYHNEVRIYPVDYNSAPNEKPIQASDNSILIDTGSFLNTAITFDSFAEVPILIDNGLLAQSQQANKQKNAQSNLISSRINNVVGGNDLKSRFYDAVSIGSNLSPTALFSKFNDEYNYYKELRAEYKDLALQPPTVTSSQMGNAFQIANSINGLTMKIGVPAPFDMDNIKRYYFMLGFETNDQAGTPFPIDSWTICNYLRMRGTYTIDGIDPMLLEQLKVLLETGVRFWHNDGTNNPMAQNVFKNKFRK
Physico‐chemical
properties
protein length:588 AA
molecular weight: 68344,36430 Da
isoelectric point:6,00796
aromaticity:0,12585
hydropathy:-0,51531

Domains

Domains [InterPro]
IPR031772
TAS
5–118
IPR031772
IPR031772
TAS
5–115
IPR031772
DC_0080
STR
87–431
DC_0080
AQT25386.1
1 588
Architecture
TAS
STR
TAS 5-86 | STR 87-431 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Staphylococcus phage St 134
[NCBI] 		1958922 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Staphylococcus epidermidis
[NCBI] 		1282 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Bacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AQT25386.1 [NCBI]
Genbank nucleotide accession
KY471386 [NCBI]
CDS location
range 9078 -> 10844
strand -
CDS
ATGGCAGATAGAAAACTGACACATTTTAAATTTTTCTATAATACACCACTGACAGATTATCAAAACACAATTCACTTTTCATCAAACAATGAACGTGACAACTATTTTTTAAATGAAAATCATTTTAATGCGATTGATTATAAAAATATTCCGTTTAATTTTATACGTGATAGAAACATGGTGAATCTTGAACAAATGTCATGGCAAGACGCACAGGGGATTAATTATTGTACGTTTAAATCTGATTTTGAAAATAGACGTTATTATGCGTTTGTGAATCAAATTGAGTATGTCAACGACCATGTGACACGAATGTATTTAGTGATTGATACAGTGATGACTTACACACAGGGTAATGTATTATCAAATGTACAAAATGCGTTTATTGAACGACAACATTTACCACGTGAGGTCTATAATTATTTGTTACCGTCACTGAGAAATAATGATGATGTTATTAAAGCAAGTAACAAATACTATTTAAATAATTATCTTGAACAGTTTGGTGGTAATCTTGTTTTATTCCAATCAAGTGCTGATTTATCTAAAAAGTTTGGTACGAAAAAAGAGCCTAACCTAGAATCATCAAAAGGGATTACTTACGATTACATTACAAGTCCAGTGAATCTGTATGTGATGAATCGTAAAGACTTTAACGAATTTATGGATAAAATGAGTAAATATCCATGGATTACGCAAAACTTTCAAAAAATTATTTTAATACCTGCTACATTTATTAATATTAATGATTTAGAATCAGTAAAAACGCAAGAAGATATTAAAGGATTAATGACACTTAAAAATGAAAAGTTATCAAATGAATGGGAATTAAAAGAATTACGTGTACCTTTTGAAAGATTACAATATATGATTAATGCTAATCAAGATGAATTAAAACATCTTGTAAGAAATGAATATTTAACAATTGAAATTTATTCATGGAATGGTGACAGTTTATTACTTGACGCAGGAAAAATTACAGAAAAAACAGGGGTTAAGTTAAGAACAAAATCTATTATTGGTTATCATAATGAGGTACGTATTTATCCTGTTGACTATAATAGTGCACCTAATGAAAAACCAATACAAGCAAGCGATAATTCAATATTGATTGATACGGGTTCATTTTTAAATACGGCTATTACGTTTGATAGTTTTGCCGAAGTCCCTATTTTAATTGATAATGGATTACTTGCACAATCTCAACAAGCCAACAAACAAAAAAATGCACAAAGTAATTTAATATCTAGCAGAATCAATAATGTTGTGGGTGGTAATGATTTGAAATCAAGATTTTATGACGCCGTAAGTATTGGTTCTAATCTTTCACCAACGGCTTTATTTTCAAAATTTAATGATGAGTATAATTACTATAAAGAATTACGTGCAGAATATAAAGACTTAGCATTACAACCCCCTACTGTGACAAGTTCACAAATGGGAAATGCGTTCCAAATCGCAAATAGTATTAATGGATTAACCATGAAAATCGGTGTACCCGCGCCCTTCGACATGGATAATATTAAACGTTATTATTTCATGTTAGGTTTTGAAACGAACGACCAAGCAGGAACACCATTCCCAATTGATTCATGGACGATATGCAATTATTTAAGAATGAGAGGTACGTATACCATTGACGGTATCGACCCTATGCTTTTAGAACAATTAAAAGTATTACTTGAAACGGGTGTCAGATTTTGGCATAACGACGGAACGAACAATCCAATGGCACAAAATGTATTTAAAAATAAATTTAGAAAGTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
a66f1eba10b186a5eb00c16f3317ba2b0faf8440e5b26b6624ade1cb18a94537
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,3751
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Bacteriophage vB_SepP_134 and Endolysin LysSte_134_1 as Potential Staphylococcus-Biofilm-Removing Biological Agents Golosova,N.N., Matveev,A.L., Tikunova,N.V., Khlusevich,Y.A., Kozlova,Y.N., Morozova,V.V., Babkin,I.V., Ushakova,T.A., Zhirakovskaya,E.V., Panina,E.A., Ryabchikova,E.I. and Tikunov,A.Y. 2024 38543751 GenBank