Protein

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Genbank accession
XPT09290.1 [GenBank]
Protein name
pre-neck appendage protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TF
Evidence RBPdetect2
Probability 0,89
Protein sequence
MNKSTRYIAGASELVYEYTSVEEMISDNKLEVGDLARTLSFYEGLGEGSNDYLIVEPGTGTEDNGKYINLSINQAKGLFTDGTVSPLQYGAKGDRITNDDSAFSSLENDFSNRIVDLKGKTYLVSKIVYGNSYVNGFWLLEDDFSVEEAQGLEFMADNSFGMISDVSDTGIAGSAYSGGANDTPTFPGRSTRHRRVIIGSQNCRATFNISGNYSSIYSTAAGNVSANLASRQSYAACPQAVNLASEEGQVYGFGGVNINNQFSIADGTKCGNLTTRLSTAGGARYAQNVATNTSQAGGGWGAVLIPVFSGGVLQSVTIEDGGQRYDSDHEISISSRQVGPSENAELEFSVDSNGAITNINVISGGAGYGENYIYDVRVQYPGESYGECAGNYSTTATTTMGQNAATVASAGTLNLGEKSLIVASDSNSKTSRDFSRQSIISGSGSSAAGYSAVILGATLSDSNHTSSVVLGRRVQSSFDRSFVLGDNSSGAASTANRRFQVASSGNVTAAGTITGSTTFTDYAEYFENYEKGVIPLGTIVTLKGKLVAPASDGDELLGVVSGTAIIAAGDSPFQWSNRFMLGEFGEVLYEDVEMVRWETTEVSFDGRVEDAQNIPENAIYYTEPHPVENPDYDPTIPNVPRSERPEEWTCVGLLGQLHVRVSDEVKVGDKLLHKDGLGIPGDGRLKVMEIKQSFDDDKGYAVALCLLV
Physico‐chemical
properties
protein length:708 AA
molecular weight: 75207,61260 Da
isoelectric point:4,49781
aromaticity:0,08757
hydropathy:-0,26963

Domains

Domains [InterPro]
DC_2249
ATT
9–227
DC_2249 IPR021865
G3DSA:2.40.300.10
RBD
521–706
G3DSA:2.40.300.10
G3DSA:4.10.80.40
RBD
574–636
G3DSA:4.10.80.40
XPT09290.1
1 708
Architecture
ATT
CHP
RBD
ATT 9-227 | CHP 496-520 | RBD 521-706 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XPT09290.1
1 708
Domain Start End Length (AA) Confidence
N-terminal 1 100 100 0,9912
Central domain 101 417 318 0,7908
C-terminal 418 708 290 0,6793
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-100
Central
101-417
C-terminal
418-708

Taxonomy

  Name Taxonomy ID Lineage
Phage Cobetia phage Carin-5
[NCBI] 		3403038 Viruses >
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XPT09290.1 [NCBI]
Genbank nucleotide accession
PV155638.1 [NCBI]
CDS location
range 85447 -> 87573
strand +
CDS
ATGAATAAAAGTACTCGTTATATTGCAGGAGCATCAGAACTAGTGTATGAATATACTAGTGTTGAAGAAATGATCTCTGATAATAAACTAGAAGTAGGTGACTTAGCACGAACTCTTAGTTTTTATGAAGGACTAGGAGAAGGAAGTAATGACTACTTAATTGTAGAACCTGGTACCGGTACTGAGGATAATGGAAAATACATTAACTTAAGTATTAATCAAGCAAAAGGATTATTTACTGATGGAACAGTGAGTCCATTACAGTACGGTGCTAAAGGTGATCGAATCACTAATGATGATTCAGCATTCTCTTCACTAGAAAATGATTTTTCTAATAGGATCGTCGATCTAAAAGGAAAAACTTACCTAGTATCAAAAATCGTTTATGGAAATTCTTACGTTAATGGTTTTTGGTTATTGGAAGATGATTTTTCAGTTGAAGAAGCTCAAGGTCTTGAGTTTATGGCTGATAATAGTTTTGGTATGATTTCTGATGTTTCAGATACAGGGATCGCAGGATCAGCTTATAGTGGTGGAGCTAATGATACTCCAACATTTCCAGGAAGGTCCACTCGTCATAGACGAGTGATCATCGGATCTCAGAACTGCCGTGCTACATTCAATATCAGTGGCAACTATTCTTCAATCTATTCTACAGCTGCAGGTAATGTTTCAGCTAACCTAGCTAGTAGACAATCCTACGCTGCATGCCCTCAAGCTGTAAACTTAGCTTCAGAAGAAGGTCAAGTTTATGGTTTTGGTGGAGTAAATATTAATAACCAGTTCTCAATAGCTGATGGTACTAAATGTGGTAATTTAACTACTCGACTATCTACTGCTGGTGGAGCTCGTTATGCTCAGAACGTAGCTACTAATACATCTCAGGCAGGAGGTGGCTGGGGAGCAGTACTAATCCCAGTATTTAGTGGAGGAGTACTTCAATCAGTCACAATTGAAGATGGTGGACAACGTTATGACTCTGATCATGAAATATCCATCTCATCCAGACAAGTAGGTCCTTCTGAGAATGCTGAACTAGAATTTTCAGTAGACAGTAATGGTGCTATTACTAATATTAATGTTATTAGTGGTGGTGCAGGTTATGGTGAGAATTACATCTATGACGTTCGAGTTCAATATCCAGGTGAAAGTTATGGAGAATGTGCAGGTAATTACTCCACGACTGCAACTACTACCATGGGTCAAAATGCTGCAACAGTAGCATCAGCTGGTACATTAAACCTAGGTGAAAAAAGTTTGATCGTAGCATCTGACTCTAATTCGAAAACTTCTCGTGATTTTTCACGTCAAAGTATTATTAGTGGATCAGGAAGCTCAGCTGCAGGTTATAGTGCAGTAATTTTGGGAGCTACTCTATCAGATTCGAATCATACTAGTTCGGTAGTACTAGGTCGTAGAGTACAATCATCTTTCGATAGATCATTTGTTCTAGGTGACAATTCATCTGGAGCAGCTTCTACAGCTAATAGAAGATTCCAAGTAGCTTCTTCAGGTAATGTTACTGCTGCAGGTACAATTACTGGCTCTACTACTTTTACTGATTATGCTGAGTATTTTGAGAATTATGAAAAAGGAGTAATTCCTCTAGGTACAATAGTAACTTTAAAAGGTAAATTAGTAGCTCCTGCTTCTGATGGTGACGAATTACTAGGAGTAGTATCTGGTACTGCTATTATAGCTGCAGGTGATAGTCCATTCCAATGGTCTAATCGTTTCATGCTAGGTGAATTCGGTGAAGTCCTGTATGAAGATGTAGAAATGGTAAGATGGGAGACTACTGAAGTTTCATTTGACGGTAGAGTTGAAGATGCTCAAAATATTCCTGAGAATGCCATTTACTATACTGAACCTCATCCAGTAGAAAATCCTGATTATGATCCTACTATTCCTAATGTACCTAGAAGTGAAAGACCTGAAGAGTGGACTTGTGTAGGTCTACTCGGTCAACTTCATGTAAGAGTATCTGATGAAGTAAAAGTAGGTGATAAATTACTTCATAAAGATGGTTTAGGTATTCCAGGAGATGGTAGACTTAAGGTAATGGAAATTAAACAATCATTTGACGATGATAAAGGTTATGCAGTAGCTTTATGTTTGCTGGTATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
d79145100567c1ba7199f7129f1376fc18e44a92151504c0315756194f09279b
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7054
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50