Protein

View in Explore
Genbank accession
YP_010112485.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence RBPdetect
Probability 0,89
Protein sequence
MIRCKKQLRMEKRLLLLLSNTEEDTDENGNLISWGGKAKVGNTITRTKSVSNANILAGLYNTNNYKLNGKPLEGNSYVVEKQMVFTCTAIWDFDNNELKCILSPRLLRIPNSSYKILGYIPDISGHGNHGVIHNSAYAEGSGVNEDGSYQFDGVDDFVTIPTAVGGKQVLMKVNWDSSNSALLYDQRGYNNEFAIYNGSADSDGNPIPAYQGRNNGQTYIDGILNSNIKASELRAITHNITITNELSAGVNKFSPVIGSNRVHNAYFTNMALYDFMLFDNISTDDKIKQLNEYVGIEGNTEWRKTK
Physico‐chemical
properties
protein length:306 AA
molecular weight: 34019,66470 Da
isoelectric point:5,99097
aromaticity:0,09150
hydropathy:-0,46961

Domains

Domains [InterPro]
DC_1124
STR
18–118
DC_1124 IPR013320
DC_1652
STR
95–305
DC_1652
YP_010112485.1
1 306
Architecture
STR
STR 18-305 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010112485.1
1 306
Domain Start End Length (AA) Confidence
N-terminal 1 127 127 0,5661
Central domain 128 295 169 0,4017
C-terminal 296 306 10 0,8466
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-127
Central
128-295
C-terminal
296-306

Taxonomy

  Name Taxonomy ID Lineage
Phage uncultured phage cr109_1
[NCBI] 		2772083 Uroviricota > Caudoviricetes > Crassvirales > Loutivirinae > Buchavirus
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010112485.1 [NCBI]
Genbank nucleotide accession
NC_055892 [NCBI]
CDS location
range 43992 -> 44912
strand +
CDS
ATGATAAGATGCAAGAAGCAGTAGAGAATGGAGAAGAGATTACTATTACTATTAAGTAATACAGAGGAGGATACAGATGAAAATGGTAATTTAATTTCTTGGGGTGGTAAAGCAAAAGTTGGAAATACTATTACTAGAACTAAGTCAGTATCTAATGCAAATATTCTAGCAGGGCTGTATAATACTAATAACTATAAACTAAATGGAAAACCATTAGAAGGAAATAGTTATGTTGTTGAAAAGCAAATGGTATTTACTTGTACGGCTATTTGGGATTTTGACAATAATGAACTTAAATGCATCCTATCTCCTAGACTACTACGTATTCCTAACTCTAGCTATAAGATATTAGGATATATTCCTGATATATCCGGTCATGGTAATCATGGAGTTATTCATAACTCGGCTTATGCAGAAGGAAGTGGAGTTAATGAAGATGGTTCATACCAATTTGATGGTGTAGATGACTTTGTTACTATTCCTACTGCGGTCGGTGGTAAACAAGTGTTGATGAAAGTTAATTGGGATAGTTCTAATTCTGCTTTACTATATGACCAAAGAGGTTATAATAATGAGTTTGCTATCTATAACGGTTCGGCAGATAGTGATGGCAATCCTATTCCGGCTTATCAAGGGAGAAACAATGGACAAACATACATTGATGGAATCTTGAATAGTAATATTAAGGCTTCGGAATTGAGAGCTATTACCCATAATATTACTATTACAAATGAGTTAAGTGCAGGGGTAAATAAATTTTCTCCTGTTATTGGTTCAAACAGAGTACACAATGCTTACTTTACTAATATGGCATTGTACGACTTCATGCTCTTCGACAACATCTCAACAGATGATAAGATTAAACAGCTGAATGAGTATGTAGGAATAGAAGGCAATACAGAATGGAGAAAGACGAAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
03d9ad09ab187d95c8b184224409718e3408245d6e228318c0c5fea03d867082
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6288
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Taxonomic proposal: Crassvirales, a new order of highly abundant and diverse bacterial viruses Shkoporov,A.N., Stockdale,S.R., Guerin,E., Ross,R.P. and Hill,C. 2023-03-24 — GenBank