Protein

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Genbank accession
XAN63708.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,88
Protein sequence
MTFKELVNKVRNLVLEAKNVTIEDTESKFTSENVEGALKECIDRADEAFQEADSGKTLLSTAIGSPTTSEQTFQDYANYITGFKSNISNLETQLKSKYSIRYGPIDGYDGNPFSANFGKSASYLIVYVYFRRSVYYYNPSGSSLGSNTGGSERAWITINSNKTGFSVHSYDTSYESYPFTGYYIACFA
Physico‐chemical
properties
protein length:188 AA
molecular weight: 20963,80580 Da
isoelectric point:5,08887
aromaticity:0,14894
hydropathy:-0,46383

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Clostridioides phage phiCDKH02
[NCBI] 		3145026 Viruses >
Host Clostridioides difficile
[NCBI] 		1496 cellular organisms > Bacteria > Bacillati > Bacillota > Clostridia > Peptostreptococcales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XAN63708.1 [NCBI]
Genbank nucleotide accession
PP767789.1 [NCBI]
CDS location
range 49454 -> 50020
strand +
CDS
ATGACTTTTAAAGAGTTGGTTAATAAAGTTAGAAATCTTGTATTAGAAGCAAAGAATGTAACTATAGAAGATACAGAAAGTAAATTTACAAGTGAAAATGTAGAAGGAGCATTGAAAGAATGTATAGATAGAGCAGATGAGGCTTTTCAAGAAGCCGATAGTGGAAAAACACTTTTATCAACTGCTATCGGCTCTCCTACTACATCAGAACAAACATTTCAAGATTATGCGAACTATATTACAGGATTTAAGAGCAATATAAGCAATTTAGAAACTCAATTGAAAAGCAAATATTCTATTAGATATGGTCCTATTGATGGATATGATGGTAATCCTTTTTCTGCTAATTTTGGCAAGAGTGCAAGTTACCTTATTGTCTATGTTTACTTTAGAAGAAGTGTATATTATTATAATCCCAGTGGTAGTTCTTTAGGAAGTAATACAGGAGGTTCTGAACGTGCATGGATTACTATAAACAGCAATAAAACTGGTTTTTCAGTTCATTCATATGATACTAGTTATGAGTCATATCCTTTTACAGGTTATTATATTGCTTGTTTCGCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
e7bc5c31ff8a317f61a49995353a31c7e78c5f8c9c4efb7d9f75ebadc7c874a5
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8049
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization of the phiCDKH02 bacteriophage commonly found in clinical isolates of Clostridioides dificile Iwanicki,A., Wultanska,D., Pituch,H. and Hinc,K. 2021-02-22 — GenBank