Protein

View in Explore
Genbank accession
UPT53196.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 0,99
TF
Evidence RBPdetect
Probability 0,85
Protein sequence
MTYVRRAPLLMRVPPIQYVSAATTAPGLTAIAKPSGLEVGSLVLVWAHGFTGASPTLDTASGSAWTVVDNDNSVTLAGRLVLFAKVLTATDVANAWNLSESAAEGAVSLNYLGNGATTVTAKNSHTTGSNLDFNVSVTGFTKAAGVRGVLGFAISTTQSTAIGVPSGFTERSQVALNSTIKVSLSDNILGYVNGATATWMNFNTPAADPQTGRGLLVEVTGP
Physico‐chemical
properties
protein length:222 AA
molecular weight: 22703,32140 Da
isoelectric point:6,72106
aromaticity:0,06757
hydropathy:0,24099

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
UPT53196.1
1 222
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,2021
Central domain 11 209 200 0,0003
C-terminal 210 222 12 0,9987
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-209
C-terminal
210-222

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage Yong-M4-211
[NCBI] 		2928849 No lineage information
Host Synechococcus sp. PCC 7002
[NCBI] 		32049 Cyanobacteriota > Cyanophyceae > Chroococcales > Geminocystaceae > Picosynechococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
UPT53196.1 [NCBI]
Genbank nucleotide accession
OM868079 [NCBI]
CDS location
range 35650 -> 36318
strand -
CDS
GTGACCTACGTCCGCCGGGCCCCCCTGCTGATGCGGGTTCCACCGATCCAGTACGTTTCGGCCGCCACCACGGCGCCCGGCTTGACGGCCATCGCCAAGCCCAGTGGGCTGGAGGTGGGTAGCCTGGTGCTGGTCTGGGCGCACGGTTTCACCGGCGCCTCGCCCACGCTCGACACGGCCAGCGGGTCGGCTTGGACGGTTGTCGACAACGACAACAGCGTGACGCTTGCCGGACGGCTCGTGCTGTTCGCTAAGGTGCTGACCGCCACGGACGTCGCCAACGCCTGGAACCTGAGCGAGTCGGCGGCCGAGGGTGCGGTCTCGCTGAACTACCTCGGCAACGGCGCCACGACGGTGACGGCGAAGAACAGCCACACCACGGGCTCGAATTTGGACTTCAACGTCTCGGTGACCGGGTTCACCAAGGCCGCCGGCGTGCGCGGCGTGCTGGGCTTTGCGATCTCGACGACGCAGTCGACCGCTATCGGCGTGCCGAGCGGTTTCACGGAACGAAGCCAAGTGGCCCTTAACAGCACAATCAAGGTCAGCCTGTCCGACAACATCCTGGGCTATGTCAACGGGGCCACGGCCACCTGGATGAACTTCAACACCCCGGCCGCGGATCCACAGACCGGGCGGGGATTGCTGGTCGAGGTCACCGGACCATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
f75cef4c33902da1f5860a901460dcc6901ee7c3086a078b8ede05d94cb476e2
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7803
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genomic analysis of Synechococcus cyanophage Yong-M4-211 Pan,L., Li,D., Lin,W., Qu,C., Cai,R., Qian,M., Wang,F., Zhou,Q., Liu,W. and Tong,Y. 2024-11 — GenBank