Protein

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Genbank accession
YP_009836197.1 [GenBank]
Protein name
baseplate wedge tail fiber protein connector
RBP type
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,91
TF
Evidence RBPdetect2
Probability 0,57
Protein sequence
MSIVSINLGQAANDGTGEALRSGGEKINANFAELDTRVNAAKNAADTANTALPGKQPLNAKLTSLATAIGTAAGLVPYLRNASATAYSFAELVLDLYDPTPARIMTTGYGGIGLNNNAAFLGTNLNPDNYVVSAHSYWGTWTLAGIGNITGFLSLQTGESNNRTQKVSAVDGNSYQRAMRANVWGAWYRSLLSGDNGLQIALLNRTMTPDASIATGQANTGASFAYSNTAPVSGNDAATMTLQVSAGYAGQFIHDLSTNEIYIRSKIGGTVGAYSKQYNSRNVVADPTVVNGGIVSTVIISGWTVTRFRNGSMIMILPFQQAGSALAANEQRVIDWAVPTAFDLSKPWHATASVVPQTDYNYTVPSCWCPSSGSIFRVAVRNGPTAQTFNVSLRLEAFWG
Physico‐chemical
properties
protein length:400 AA
molecular weight: 42221,71290 Da
isoelectric point:8,43725
aromaticity:0,09000
hydropathy:-0,05225

Domains

Domains [InterPro]
DC_0662
STR
1–396
DC_0662
IPR036240
STR
5–36
IPR036240
YP_009836197.1
1 400
Architecture
STR
STR 1-396 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage PMBT14
[NCBI] 		2059855 Uroviricota > Caudoviricetes > Knuthellervirus >
Host Pseudomonas fluorescens
[NCBI] 		294 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Pseudomonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009836197.1 [NCBI]
Genbank nucleotide accession
NC_048687 [NCBI]
CDS location
range 12829 -> 14031
strand +
CDS
ATGAGTATCGTAAGCATCAACTTAGGTCAGGCTGCCAACGATGGAACGGGTGAAGCACTTCGGTCGGGTGGCGAAAAGATCAATGCTAACTTTGCGGAACTCGACACTCGGGTTAATGCCGCAAAAAACGCGGCGGATACAGCTAACACGGCCCTCCCGGGTAAGCAGCCCCTGAATGCTAAGCTGACCAGTTTGGCCACTGCCATTGGTACGGCGGCTGGCCTGGTTCCATACCTTCGCAATGCCAGTGCAACGGCGTATTCTTTTGCTGAATTGGTACTTGACCTTTACGATCCCACACCGGCCCGTATCATGACCACGGGATACGGAGGTATTGGGCTCAATAACAATGCTGCCTTCCTTGGAACTAACCTTAACCCCGATAACTACGTGGTTAGTGCCCATTCGTATTGGGGCACATGGACCCTAGCCGGTATCGGAAATATCACTGGCTTTCTTTCCTTGCAGACGGGTGAGTCTAACAACCGAACCCAGAAGGTTTCAGCCGTAGATGGAAATTCTTATCAGCGTGCAATGAGGGCCAACGTGTGGGGTGCTTGGTATAGATCTTTACTGTCCGGGGATAACGGGCTGCAAATTGCCCTCCTGAACCGTACAATGACACCCGATGCGTCAATAGCAACCGGGCAGGCCAATACCGGGGCGTCATTTGCCTACTCGAACACCGCGCCGGTATCCGGTAACGACGCGGCTACCATGACGCTACAGGTTAGTGCCGGGTACGCGGGTCAGTTTATTCATGACCTAAGTACGAACGAAATTTACATTCGGAGTAAGATTGGTGGCACAGTGGGGGCTTACTCCAAGCAGTACAACTCCCGGAACGTTGTTGCTGACCCCACCGTTGTTAACGGCGGTATCGTCTCAACGGTGATTATCAGCGGATGGACGGTTACACGGTTTCGTAATGGGTCGATGATTATGATCCTCCCGTTCCAGCAGGCGGGATCGGCTCTTGCAGCTAACGAGCAAAGAGTAATCGACTGGGCAGTACCAACAGCTTTTGATCTTTCTAAGCCTTGGCATGCAACCGCTTCTGTGGTTCCCCAGACCGACTATAACTACACGGTTCCATCATGCTGGTGTCCTTCGTCTGGTAGCATCTTTCGAGTGGCAGTTCGCAATGGTCCAACTGCACAAACCTTCAACGTTTCATTAAGACTCGAGGCTTTCTGGGGATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
16d6a0203bbcaa37cbd2ff01f71646a7b6af08366c47eba3f7b154c158cef80b
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7620
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genome sequence of the novel virulent bacteriophage PMBT14 with lytic activity against Pseudomonas fluorescens DSM 50090(R) Koberg,S., Gieschler,S., Brinks,E., Wenning,M., Neve,H. and Franz,C.M. 2018 29786121 GenBank