Protein

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Genbank accession
YP_003358664.1 [GenBank]
Protein name
tail spike protein
RBP type
TSP
Evidence UniProt/TrEMBL
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,94
Protein sequence
MNPQFNQPKGSTAKEINKNPRELWRRALSDLGLNLVEGSFEDGATVTTATDAVWHINGAQCYTWGGSLPKTVNKNSTPQSTGGVSSSAWVSVESKTLGSELLTGEKASLVGYESSTVKDALDSVVNKRVLYFSRFGTLQSLQSYITSNNLKSVEIIFDQVVNFGPGSGGLSTIFTLSNMDCLEIRGLVIRDTLLYSGAFDLTRVFDLTNITNLVFEVDASSTLEYVGDDKRGLTPLRLNGCNNFTFIGKTNKCYQGYECTNVKNLFARSVNNDTRYPHLLGNVGVVDIHTVNNGCRRDFFLTNNCGGGQITVDAIDTQQGTPIKMYFYNGNMDNQISNLTVNYKYRSTGRYTLPYRVAPIWLDWGWDSTITETMIAGLMRNITINYDVVGGNWGSVIGTTKLIDESVADNNPRGYGYSNIVITGRIELGGGDSGNHAWFFNFNTNDNWTSGDSINGFICRDLVVRKLNGGDVYVNTNQLTGAVANYGGVKFENVNAPEAKLTATDYSKVKFDNCTFSDFASAGAAPDSSKCATGSMLFIKAAGDSRNFKIGTVSTYRNVSLWTVDVVANSPVSGVSSAWHGRLQGTLVMGTTPAASTMEGSVQSTFTKGTAATPTISVDTSGNVFLNFAGWDSIDANIAVNVKMQYDEYSGGGNKTVRGMISKSNGGFSLNLS
Physico‐chemical
properties
protein length:673 AA
molecular weight: 72817,41930 Da
isoelectric point:5,87899
aromaticity:0,09955
hydropathy:-0,22110

Domains

Domains [InterPro]
DC_0018
ATT
3–206
DC_0018
G3DSA:2.10.10.80
ATT
34–103
G3DSA:2.10.10.80
IPR040775
RBD
37–92
IPR040775
YP_003358664.1
1 673
Architecture
ATT
ATT 3-206 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_003358664.1
1 673
Domain Start End Length (AA) Confidence
N-terminal 1 141 141 0,9894
Central domain 142 519 379 0,9926
C-terminal 520 673 153 0,9817
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-141
Central
142-519
C-terminal
520-673

Taxonomy

  Name Taxonomy ID Lineage
Phage Shigella phage Ag3
[NCBI] 		637730 Uroviricota > Caudoviricetes > Pantevenvirales > Aglimvirinae > Agtrevirus
Host Shigella boydii
[NCBI] 		621 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_003358664.1 [NCBI]
Genbank nucleotide accession
NC_013693 [NCBI]
CDS location
range 125698 -> 127719
strand -
CDS
ATGAATCCGCAATTCAATCAGCCGAAAGGTTCAACAGCCAAAGAAATCAACAAAAACCCGCGTGAATTGTGGCGGCGGGCTTTGTCGGATTTAGGTCTTAATTTGGTCGAAGGTAGTTTTGAAGACGGTGCTACTGTGACGACTGCAACCGACGCCGTGTGGCATATCAATGGTGCCCAGTGTTATACCTGGGGTGGGTCTTTGCCCAAAACTGTGAACAAAAACTCAACACCACAATCAACTGGTGGTGTATCATCTTCAGCATGGGTTAGCGTTGAAAGCAAAACGCTGGGTTCTGAACTGCTGACGGGTGAAAAGGCAAGTCTTGTCGGATACGAATCATCTACAGTAAAAGATGCTCTTGATTCAGTTGTAAACAAACGTGTCCTTTACTTCTCCCGATTCGGTACACTGCAATCTTTGCAGTCTTACATCACATCTAACAACCTAAAAAGTGTTGAAATTATTTTTGACCAGGTTGTGAACTTTGGTCCTGGTAGTGGCGGTCTTAGTACCATCTTTACTTTAAGTAATATGGACTGCCTTGAAATTCGCGGACTGGTTATCAGGGACACCCTGCTTTACTCCGGTGCATTTGACCTGACGCGCGTGTTCGACCTGACGAATATCACCAATCTGGTGTTTGAAGTGGATGCTTCTTCCACCCTTGAGTATGTCGGTGATGACAAACGCGGACTAACCCCACTGCGCCTGAATGGATGCAATAATTTCACATTTATTGGCAAGACTAACAAGTGCTATCAAGGCTACGAATGTACTAATGTAAAAAATCTCTTTGCTCGCAGTGTGAACAATGACACTCGCTATCCACATCTCCTTGGTAATGTTGGTGTAGTTGACATCCATACAGTTAATAATGGTTGCCGTCGTGATTTCTTTCTGACGAACAATTGTGGTGGTGGCCAGATAACTGTTGATGCCATTGATACTCAACAGGGTACGCCAATCAAAATGTATTTCTATAACGGTAACATGGATAATCAAATATCTAATCTTACAGTCAATTACAAATATCGTAGCACAGGGCGTTACACGCTTCCGTACCGCGTAGCACCAATATGGCTGGATTGGGGTTGGGACAGCACCATAACAGAGACGATGATTGCCGGGCTGATGCGTAACATAACCATCAATTATGATGTCGTCGGGGGGAATTGGGGAAGTGTTATTGGCACAACAAAGCTGATTGACGAGTCTGTAGCAGATAATAACCCGCGTGGCTATGGTTATTCAAATATTGTGATCACCGGACGCATAGAACTTGGCGGCGGAGACTCTGGTAACCATGCATGGTTCTTTAACTTCAACACCAACGATAACTGGACGTCAGGCGATTCTATTAATGGATTTATCTGTCGTGACCTGGTGGTCCGAAAGCTGAATGGTGGTGATGTATATGTCAATACCAATCAGCTTACAGGCGCAGTGGCGAACTATGGCGGAGTTAAATTCGAAAATGTTAATGCACCAGAAGCTAAGTTAACAGCTACCGATTACAGCAAAGTAAAATTTGATAATTGCACATTCTCTGATTTTGCATCTGCAGGTGCAGCGCCTGATTCAAGTAAATGCGCTACGGGTTCAATGCTGTTCATTAAAGCCGCTGGAGATTCCAGGAATTTTAAAATTGGCACTGTGAGTACGTACCGAAACGTAAGTTTGTGGACGGTTGATGTTGTAGCCAACTCCCCGGTTTCAGGTGTTTCTAGCGCATGGCATGGGCGATTGCAGGGAACATTAGTGATGGGTACAACTCCAGCAGCAAGCACAATGGAAGGTTCAGTGCAAAGTACGTTCACAAAAGGAACAGCAGCCACGCCAACAATATCAGTAGACACTAGCGGAAATGTGTTCCTGAACTTTGCTGGATGGGATTCAATTGACGCCAACATCGCTGTAAATGTCAAAATGCAATATGACGAATACAGCGGTGGAGGCAACAAAACTGTTCGTGGTATGATAAGCAAGTCAAATGGTGGGTTTAGTCTAAATCTAAGCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
14faf2e80526fff17cf55f391c1a526cb4b4fc8202d75b87b2a3178cd6e763f4
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6921
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Sequence of Vi-specific Shigella boydii phage phiSboM-AG3 Anany,H.E., Lingohr,E.J., Villegas,A., Kropinski,A.M., She,Y.-M. and Griffiths,M. 2011-05-19 — GenBank