Protein

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Genbank accession
YP_007676445.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,88
TSP
Evidence RBPdetect2
Probability 0,90
Protein sequence
MGVKLNPFTGKLDVVDSPSGDFSTVELNQGTQTSPSISFDGDPNTGIYSPGADQVAISTGGTGRIFVDADGQVGINSAPQFAFGLRVSPANGQTNALVSLVAGTNSATSRIDFGDSDSNDVGRIVYNHANNFFELRTNGSSGVFIDASGNIAFGTGGSVDDNTYIGHPTADAIAITTANNERARIDSSGRLLVGTSSSSTQGKVVIVGNSNSSTGEGELHLARGATPTSQQNLGNIHFGGVGLEKAAQIICKRDGGTWTSGSSHPSRLEFLTTADGASSPTERMRITSDGNVLIGKTSSDFTANGCEFSSTGGVFTRTAEALTINRQGSNGIAVVLRRSNVTVGSISVTTSATAYNTSSDYRLKENVVQLTGAADRLKQLKPSQFNFIADPDTTVDGFLAHEAQAVVPECVTGTKDAVDDDGNPVYQGIDQSKLVPLLTAALQEALAKIETLEQRLNDAGIA
Physico‐chemical
properties
protein length:462 AA
molecular weight: 47827,86600 Da
isoelectric point:4,77018
aromaticity:0,05628
hydropathy:-0,22424

Domains

Domains [InterPro]
DC_0680
STR
3–131
DC_0680 DC_1367
DC_0680
STR
102–247
DC_0680 IPR030392
IPR030392
CHP
359–411
IPR030392 Coil
YP_007676445.1
1 462
Architecture
STR
RBD
STR 3-247 | RBD 248-462
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_007676445.1
1 462
Domain Start End Length (AA) Confidence
N-terminal 1 17 17 0,9230
Central domain 18 216 200 0,0695
C-terminal 217 462 245 0,9819
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-17
Central
18-216
C-terminal
217-462

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage S-RIP1
[NCBI] 		754041 Uroviricota > Caudoviricetes > Autographivirales > Kajamvirus SRIP1 >
Host Synechococcus sp. WH 8101
[NCBI] 		59932 Bacteria > Cyanobacteria > Oscillatoriophycideae > Chroococcales > Synechococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_007676445.1 [NCBI]
Genbank nucleotide accession
NC_020867.1 [NCBI]
CDS location
range 14047 -> 15435
strand +
CDS
ATGGGAGTTAAACTTAACCCATTTACGGGTAAACTAGATGTTGTAGATAGTCCAAGTGGGGACTTTTCTACAGTTGAATTAAATCAAGGAACACAAACAAGTCCATCCATTTCATTTGACGGTGACCCTAACACCGGTATTTATTCACCTGGAGCGGACCAAGTAGCCATCTCGACTGGTGGCACTGGGCGGATATTTGTTGATGCTGACGGCCAAGTAGGTATTAACTCTGCACCGCAGTTTGCTTTTGGCCTGCGTGTCTCTCCAGCGAATGGACAAACCAATGCCCTTGTGAGTCTTGTCGCTGGAACAAACAGCGCTACTTCTAGGATCGACTTTGGAGATTCTGACTCTAATGATGTTGGGCGAATTGTTTACAACCACGCAAATAATTTTTTCGAACTAAGAACCAATGGTAGTTCAGGGGTATTTATTGACGCTTCTGGCAATATTGCCTTTGGTACTGGTGGATCAGTTGATGACAATACATACATTGGCCACCCAACCGCAGACGCAATAGCCATCACCACAGCTAACAACGAACGCGCCCGCATCGACAGCTCGGGCAGGCTGTTGGTGGGCACGTCTAGTAGCTCCACGCAAGGCAAGGTTGTTATTGTTGGAAATTCAAACAGTTCGACTGGTGAAGGTGAATTACATCTAGCAAGGGGTGCAACTCCCACTTCCCAACAGAATTTAGGCAACATTCACTTTGGAGGGGTGGGACTAGAAAAAGCTGCTCAAATTATTTGTAAGCGTGATGGAGGAACATGGACTTCAGGCTCCTCTCATCCCTCAAGGTTGGAGTTTCTCACCACCGCCGACGGAGCGAGCAGCCCGACGGAGCGGATGAGGATTACCTCCGACGGGAATGTGCTTATTGGTAAAACATCTAGCGATTTCACTGCTAATGGATGTGAATTCTCTTCGACTGGTGGCGTATTTACTCGGACAGCGGAAGCTCTAACAATCAACAGACAGGGAAGTAACGGAATTGCTGTTGTATTAAGGCGAAGCAATGTAACTGTTGGCTCAATTAGCGTTACAACATCTGCCACCGCCTACAACACCTCCTCCGACTACCGCCTCAAGGAAAACGTTGTCCAGCTGACTGGTGCTGCTGATCGCCTCAAGCAGCTCAAGCCCAGCCAGTTCAACTTCATCGCGGATCCTGACACCACGGTTGACGGTTTCCTCGCTCACGAAGCACAAGCCGTTGTTCCTGAGTGCGTTACTGGCACAAAAGATGCAGTGGATGATGACGGCAACCCCGTCTACCAAGGCATCGACCAGTCCAAGCTGGTGCCATTGCTGACTGCTGCGTTGCAGGAAGCTCTTGCCAAGATCGAAACTCTTGAGCAGCGTCTAAATGATGCTGGCATCGCCTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
11808890c4af623694a6ce574d689464ee83939ee90ea93cf958c9cdfbadd7e4
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8105
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Synechococcus phage S-RIP1 isolate R2_2007 Henn,M.R., Marston,M., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Fitzgerald,M.F., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E.R., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Neiman,D., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Haas,B., Nusbaum,C. and Birren,B. 2021-02-24 — GenBank