Protein

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Genbank accession
YP_009279724.1 [GenBank]
Protein name
head protein
RBP type
TSP
Evidence RBPdetect
Probability 0,57
Protein sequence
MTQYSFPWNDVHGDRLYDADDFMRFFAAFLKTGVVMSYKGGLRVRSAQDGMNIQVGSGSAVIEGSSYLNDADIGIQVNVASSIQDRVDSIVLRMDKNARTTQLFYKPGDTTVARNDTTYELQLAKISVKTNTTQITDADITDMRSDFTVCGWSTPFDNINVDGIVDQYKEIFEQKDLEFQAWFKNLKKQLDDNQASNLQNQIDNLGSEKANDHEVVHKTGDESIAGKKTFTGNVEVNGRLTLPTKSWSGQLGGGITLSLRKKGTTVEYSIGGEISSNILANSNLVNLSVPNEFRPRNRCSLVGHMAGRWDSFHIDIQSSGACQWFGPIVNRGTPRGTGTYPID
Physico‐chemical
properties
protein length:343 AA
molecular weight: 37965,86010 Da
isoelectric point:5,47072
aromaticity:0,08746
hydropathy:-0,46385

Domains

Domains [InterPro]
DC_1002
STR
1–298
DC_1002
SSF69349
STR
198–241
SSF69349 IPR008982
G3DSA:6.10.140.2190
STR
198–238
G3DSA:6.10.140.2190 G3DSA:2.60.40.1830
IPR040956
Unmapped
213–233
IPR040956 cd07964
IPR015027
RBD
246–341
IPR015027
YP_009279724.1
1 343
Architecture
STR
RBD
STR 1-298 | RBD 299-343
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009279724.1
1 343
Domain Start End Length (AA) Confidence
N-terminal 1 229 229 0,9958
Central domain 230 332 104 0,0129
C-terminal 333 343 10 0,9951
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-229
Central
230-332
C-terminal
333-343

Taxonomy

  Name Taxonomy ID Lineage
Phage Lactococcus phage 63301
[NCBI] 		1871687 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Lactococcus lactis
[NCBI] 		1358 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Lactobacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009279724.1 [NCBI]
Genbank nucleotide accession
NC_031017 [NCBI]
CDS location
range 27392 -> 28423
strand +
CDS
ATGACACAATATAGTTTTCCGTGGAACGACGTACACGGAGATCGGCTTTATGACGCAGATGATTTTATGCGATTTTTTGCAGCGTTCCTGAAAACAGGCGTTGTAATGTCTTATAAAGGTGGATTGCGTGTACGCTCTGCTCAGGACGGAATGAATATTCAAGTAGGAAGCGGTTCAGCCGTAATTGAAGGAAGTTCGTATTTAAATGATGCGGATATTGGCATTCAAGTAAATGTTGCCTCATCAATACAAGATCGTGTTGATTCTATTGTTTTACGAATGGATAAAAATGCAAGAACTACACAATTGTTCTATAAACCAGGCGATACGACTGTTGCTAGAAATGATACAACATACGAATTACAATTGGCAAAAATTTCCGTAAAAACTAATACCACCCAAATCACTGATGCGGATATCACAGATATGCGTAGTGATTTTACGGTATGTGGGTGGTCTACTCCGTTTGATAATATCAATGTTGATGGAATTGTAGACCAATACAAGGAGATATTTGAACAAAAAGACTTGGAATTTCAAGCATGGTTTAAGAATTTAAAAAAACAACTGGATGATAATCAAGCCTCAAATTTGCAAAATCAAATTGATAATCTAGGTAGTGAGAAAGCTAATGATCATGAGGTTGTTCATAAAACTGGTGACGAATCAATTGCTGGTAAAAAGACGTTTACTGGTAACGTTGAAGTAAATGGAAGATTAACACTTCCAACCAAATCATGGTCTGGACAACTCGGAGGTGGGATCACTCTTAGCTTACGGAAGAAAGGGACTACAGTTGAATATTCAATTGGTGGGGAAATATCCTCTAATATTCTTGCAAATTCCAATTTAGTAAATCTCAGTGTTCCAAATGAATTTCGTCCCAGAAATAGGTGTTCCCTTGTAGGTCACATGGCTGGTCGTTGGGATTCATTTCATATTGACATTCAATCAAGTGGAGCATGTCAGTGGTTTGGTCCAATTGTGAACAGGGGTACTCCTCGTGGGACTGGTACATATCCAATAGATTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
9ca5f7a5f31bc0d922a31a3d02db12180a85a5d82027b4c2ba8c38ec2553a862
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8420
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genome sequence of eight prophages isolated from Lactococcus lactis dairy strains Oliveira,J. and van Sinderen,D. 2016-12-29 — GenBank