Phage RBP Database

Genbank accession

YP_004323463.1 [GenBank]

Protein name

baseplate wedge subunit

RBP type

TSP

Evidence DepoScope

Probability 1,00

TF

Evidence RBPdetect2

Probability 0,91

Protein sequence

MATRIKLKRSTVAATVPTTSNLEDGEVALNIADKKLYARNGSNIIEVANQKPNTGEVVTTMLSTDITNGQGNTFYVASVGSDNTTLGNGGANGKHPDTPFLTITKALTTATSGDTILVAPGEYQETFPMTVGDGVTLRGTNLRSTSVKPSSATNANTAFILSGDCHISDLTIKDFFYDSSNDDGYAFEVVSNMNSTQSPYIERCTVNTKGSVTSGSDPYGYAQGDAGRGAKLDGANIASASQHGSVLFNECTFITPNQIGVKVTNGMRVEWLNCFNYFASIGIQGIQGATGKSGSGSTRLKLGGTSGTFSTSEVAYQLENSFQSGVYARSGSTITLTRTGHGLVTGDYIYADHISGGATDGFYQVTLVDANNVTYTSGSGTISSSNVTYKKAVGRGVVASNDGTYVFITGKGTGEFVTTTKPTKVTSRFGDSQLDTAQKKFGTASILLDGTEDNVKVPTDEDFGFGSANWCLEAFIRPGSVTGTQRIFDLRDGSATDTAPTMYLNGTALHFAVGNTSQINGGTLSTGTWYHVAVARSNGTTRLFLDGTELGTYTDGNDYGTTTPVVIGSNYAASPVEAFNGYVDEVRISKGSARFTAGFTPTTSEYGSDLNTVLLLHANGTSGSTTFTDVSGGISDIRSSGGDSATSVITADYSAFGAEVRSVASACVYGQKGVQADGSGVKLILTSHNFGYVGSGADFTNDPSLAIQNNEVEELNSGKVLFSSTDQNGDFRVGDAFTVDVSTGNVSFQATSTAQSAANITLSDSTGTTNIFPAYIETGNLRFAGNSMTSTTGQVIVDPSGEEDFVVNAETIVKEAVYFDVNKSISFGSNVQGALKIAGFGGSTVFGSSEAANFSTRSFVVLKNGLGTVNLTGEGSGYTGGAQPVEVTTNPFQIATATATLGSTGALKEFTLTNRGNLYTIAPTVTLSGGGVVSDGDATATLGQAGVLQNITIQTGGTGYSTISATVSAPQQNQFTGDATYTDAANVSQPVVDTTADTIYVPNHSFETGMEMTFDATTLDATAVAPTGLTTATTYYAIRVDKDLIKVATSLSNANAGTAQALSGTPSGQQFFQGRTATVTFTHTGGVIDAYTITDAGSGYQNAPTITITGGNNDAAVAADLSFSVDTIVVGSGGEYASNPTVTLTNAAGDTTGQNAAASATIGFAVASISLDTQGLGYRNIPSLVPSGGSATTDAQFTAVLNEQEGRIASITIADGGSGYTSTPTLTFSGGGGIGGTLQADIQSVDGNITSSGSGYTAGTYNNVAFTGGSPTIVATADFTVPGFSGTITNAGSGYTSGSYTVTFRNTPTATYTVTVAQRDKLSISGITGTFAVGNTVTGSVSGASATVTFVASDQSFLYVTAGSSFQDAQTDTISNGSGASAVLDTLGGGINRYLIDLGSGAQEAPSFTFLDNNTYRFDTTDTSNLNHPLEITSVVGITTRQYRTPGTAGSYFEVVVGSASSNSTSTTYTCTVHGIGMSEDSVITIAAGALGDAGDQMTATAVVTGGAVTSITILTQGTNYALGDVLLIDEDDLGINSGGSGFQYTLNANNTGISTVSNISLNGTGYAVNDVLSVDDATVGGGGGSGFQFTVTKVGFCSAVTVTSPGTAFEASDTLILGDVGGAGVAQGTGLTVTIATIVSEKNLEMTQQGIMTLGPAGSSQLILNPDGSIAATSYNIASSGQASFNGGVSTSTGTFTGVLTASSTSAFTGLATFNGGLTTVGATTLVQTTAKFADGLAATPSISFDNSATTGLFRQAADVIGVSIAGTDKFRFDTNTFDTPKLQVDSTLGSTTPFFKVDPTTLNVLIGGATNQLSLDNSNTIKSVGTNIDIPLNFETKGGGDFVFKGGTDKTFSITDGTSDVVTVDTATGTALFGGNLDAGKLRIRQNVVQNNSSTATRAFGEITALTVTGTGSGYTDGTYTATATTSNNSGTGCTVTLTVASGTFSAVTIVAKGQNYRVGDLLTITAAGGGTGLSVTVSDIDGQGVVLKPVQGSSVLVDSTGSLIIPSGTTNERPNTLDRITGAIRFNSSQLQFEGFNGNDFVSLGGVRDVDQDTYILTESAPSADEDTFEFYAAGINNISLNNTTLTFRPNMTTTKYDASHLATIDGGYTLNGTTFGTNPFQVSNLGSSVFSVRSKNDIEVNGGLRFRNVPSQGVASSIDAATITQTATAYTASTTFTAVGTTAQIEGAGLTVNVTTNGAGTITTIAINAGGTGYESGETIQIAGTALGGLSPDNNVTFKLDGITGGSTAIARLDVLQQEYITRMDSKPFINIDAIGAETGWKINRGWNAGTESYLTVFDSTATFMELDDCRVEGGELTSFPTSATITAFDKSQFKGSKTLVTIESDDNKVHMLEVTVVCASNGTTAHATVTNSITSDNDLMDATVAVVGTNVNISLAKSSAATSSSNFTGRFTTTKVKV

Physico‐chemical properties

protein length:	2423 AA
molecular weight:	247637,32410 Da
isoelectric point:	4,42164
aromaticity:	0,07635
hydropathy:	-0,04300

Domains [InterPro]

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
DC_0763	STR	DC_0763	4	781	Novel HMM	DC_0763	Central	Low	Positional only	71 proteins / 71 hits
IPR011050	STR	IPR011050	96	391	Merged direct domain	Pectin lyase fold/virulence factor	Central	Low	Positional only	572 proteins / 572 hits
G3DSA:2.60.120.200	STR	G3DSA:2.60.120.200	425	590	Merged direct domain	G3DSA:2.60.120.200	Central	Low	Positional only	153 proteins / 153 hits
IPR013320	STR	IPR013320	436	589	Merged direct domain	Concanavalin A-like lectin/glucanase domain superfamily	Central	Low	Positional only	237 proteins / 237 hits
PF13385	LEC	DC_0004	449	590	InterPro cluster	PF13385	C-terminal	Medium	Text match	334 proteins / 417 hits
DC_0115	STR	DC_0115	973	1163	Novel HMM	DC_0115	Central	Low	Positional only	18 proteins / 18 hits
DC_0155	STR	DC_0155	1152	1259	Novel HMM	DC_0155	Central	Low	Positional only	112 proteins / 112 hits
DC_0692	RBD	DC_0692	1715	2422	Novel HMM	DC_0692	C-terminal	Low	Positional only	9 proteins / 9 hits

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout

N-terminal

Central

C-terminal

YP_004323463.1

1 2423

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	130	130	0,5175
Central domain	131	429	300	0,9629
C-terminal	430	2423	1993	0,2598

Note: Constraints were applied during segmentation.
Fixed 37 C-terminal predictions appearing before Central domain

Legend: N-terminal Central domain C-terminal

3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring

N-terminal
1-130

Central
131-429

C-terminal
430-2423

	Name	Taxonomy ID	Lineage
Phage	Prochlorococcus phage P-HM2 [NCBI]	445696	Uroviricota > Caudoviricetes > Eurybiavirus >
Host	Prochlorococcus marinus subsp. pastoris str. CCMP1986 [NCBI]	59919	Bacteria > Cyanobacteria > Prochlorales > Prochlorococcaceae > Prochlorococcus > Prochlorococcus marinus

Coding sequence (CDS)

Genbank protein accession

YP_004323463.1 [NCBI]

Genbank nucleotide accession

NC_015284 [NCBI]

CDS location

range 70550 -> 77821
strand +

CDS

ATGGCAACGAGAATCAAACTAAAGAGATCGACAGTAGCAGCGACGGTCCCGACGACTTCTAATTTAGAAGACGGTGAGGTCGCTCTTAATATAGCGGATAAGAAACTATACGCTAGAAACGGATCGAATATAATAGAGGTAGCAAACCAGAAACCTAACACAGGTGAGGTGGTTACTACCATGCTTTCTACTGACATAACGAATGGTCAGGGAAATACTTTTTATGTTGCTTCAGTAGGTTCAGATAATACAACTCTTGGTAATGGTGGTGCTAATGGTAAGCACCCAGATACACCTTTTCTTACTATCACAAAGGCACTTACAACTGCCACATCAGGTGATACTATTCTCGTTGCACCAGGTGAATATCAAGAAACATTCCCAATGACTGTTGGGGATGGTGTAACATTACGTGGAACAAATTTAAGATCAACATCAGTAAAACCATCATCTGCAACTAACGCTAATACTGCGTTTATACTCTCTGGTGATTGCCACATTTCAGATTTAACTATCAAGGACTTCTTCTATGATAGTAGTAACGACGACGGATATGCATTTGAAGTAGTCTCCAATATGAACTCTACACAGAGTCCATATATTGAGAGATGTACAGTTAATACAAAAGGTAGTGTAACATCTGGTTCAGATCCTTATGGATATGCACAAGGAGATGCAGGACGTGGTGCTAAGTTAGATGGTGCAAATATTGCATCTGCATCACAGCATGGTTCAGTATTGTTCAATGAATGTACCTTTATAACTCCAAACCAGATTGGTGTGAAGGTTACTAATGGTATGCGTGTAGAGTGGTTGAATTGCTTCAACTATTTTGCATCTATCGGTATTCAAGGTATTCAAGGTGCAACTGGTAAATCTGGGTCAGGTAGTACAAGATTAAAACTAGGTGGAACATCAGGAACATTCTCTACATCAGAGGTTGCATATCAGTTAGAAAATAGTTTCCAGTCAGGTGTATATGCTAGATCTGGAAGTACAATTACATTAACAAGAACTGGACATGGTTTAGTAACAGGTGATTACATCTATGCAGATCACATCAGTGGTGGTGCTACAGATGGATTTTATCAAGTCACTTTAGTAGATGCTAATAATGTAACTTACACTAGTGGATCTGGAACTATATCATCCAGTAACGTAACTTATAAGAAAGCAGTTGGTCGTGGTGTAGTTGCTAGTAACGATGGAACTTATGTATTCATCACAGGAAAAGGAACTGGAGAATTTGTAACTACAACAAAACCCACTAAAGTAACAAGTAGATTTGGTGACTCACAGTTAGATACAGCACAGAAAAAGTTTGGAACAGCATCCATATTATTAGACGGAACAGAAGATAACGTAAAAGTTCCTACTGATGAAGACTTTGGATTTGGTTCTGCAAACTGGTGTCTAGAAGCATTCATTAGACCAGGCAGTGTTACAGGAACACAAAGAATATTTGACCTTAGAGATGGTTCTGCTACAGATACAGCACCTACAATGTATCTTAATGGAACTGCATTGCATTTCGCAGTAGGAAATACATCACAAATTAATGGTGGAACTCTATCAACAGGAACATGGTATCACGTTGCAGTAGCAAGAAGTAATGGCACAACAAGATTATTTTTAGATGGAACTGAGTTAGGCACATATACAGATGGTAATGACTATGGAACTACAACACCTGTTGTTATTGGTTCTAACTATGCTGCTAGTCCTGTAGAAGCATTTAACGGATATGTGGATGAAGTAAGAATCAGTAAAGGTTCTGCTCGTTTTACTGCAGGATTTACCCCTACAACGAGCGAATATGGTTCTGACTTGAATACAGTACTATTGCTCCATGCAAACGGTACAAGCGGTTCTACGACCTTTACAGACGTGTCTGGTGGTATATCTGATATTAGATCTAGCGGTGGAGATTCTGCTACATCTGTTATCACTGCTGACTACTCAGCATTCGGTGCTGAAGTTCGTTCAGTTGCATCTGCATGTGTATATGGACAGAAGGGTGTACAGGCAGACGGTTCTGGTGTAAAACTTATTCTTACATCACATAACTTCGGTTATGTTGGATCTGGTGCAGACTTTACTAATGACCCATCTCTTGCTATTCAAAATAATGAAGTAGAAGAACTCAATAGTGGTAAAGTATTGTTCTCTTCCACAGACCAAAATGGTGACTTCAGAGTTGGTGATGCATTTACTGTTGATGTATCTACTGGTAATGTATCTTTCCAAGCAACATCGACAGCTCAGTCAGCTGCGAATATCACATTAAGTGATTCAACTGGTACTACAAATATATTCCCTGCTTATATTGAGACAGGTAATTTAAGATTTGCGGGTAACAGCATGACTTCTACCACAGGTCAGGTAATCGTTGACCCCTCTGGTGAAGAAGACTTTGTTGTTAATGCTGAAACAATTGTAAAAGAAGCAGTTTATTTTGATGTTAATAAATCAATATCATTTGGTAGTAATGTTCAAGGTGCTCTAAAGATTGCAGGATTTGGTGGATCTACAGTATTTGGATCATCAGAAGCTGCTAACTTCTCTACTAGATCATTCGTTGTTCTTAAGAATGGTTTAGGAACTGTAAATTTAACAGGAGAAGGATCAGGATACACTGGTGGTGCACAACCAGTAGAGGTAACAACCAATCCATTCCAAATAGCAACTGCAACTGCAACTCTTGGAAGTACAGGTGCATTAAAAGAATTTACATTAACAAATAGAGGAAATTTATATACGATTGCTCCTACTGTCACTCTTAGTGGTGGTGGAGTTGTATCAGATGGTGATGCTACTGCAACACTAGGACAAGCGGGTGTTCTACAAAACATCACTATACAGACTGGTGGTACAGGATATTCCACAATCAGTGCAACTGTATCTGCTCCTCAGCAAAACCAATTCACAGGAGATGCAACTTATACAGATGCTGCTAATGTATCCCAACCTGTTGTAGATACAACTGCAGATACAATCTACGTTCCAAACCACAGTTTTGAAACTGGTATGGAGATGACATTTGATGCTACAACATTGGATGCAACTGCAGTAGCACCTACTGGTCTTACAACTGCAACAACATACTATGCAATTCGTGTAGATAAAGATTTAATAAAAGTTGCAACAAGTTTATCAAATGCAAATGCAGGAACTGCTCAGGCATTATCTGGTACTCCTTCTGGTCAGCAGTTCTTCCAAGGTAGAACCGCAACTGTAACATTTACACATACTGGTGGTGTTATTGATGCTTACACTATTACTGATGCAGGATCTGGATATCAAAATGCTCCCACAATAACAATAACTGGTGGTAATAATGATGCTGCTGTAGCAGCTGACTTATCATTCTCTGTAGATACAATTGTTGTTGGTAGTGGTGGTGAATATGCATCTAACCCAACTGTAACATTAACAAATGCTGCAGGAGATACAACTGGACAAAATGCTGCTGCTAGTGCAACTATTGGATTTGCAGTTGCTTCAATTTCATTAGACACTCAAGGTTTAGGATATAGAAACATACCTTCGCTAGTTCCATCAGGAGGATCCGCTACAACAGATGCACAATTTACTGCAGTATTGAATGAGCAAGAAGGTAGAATAGCATCAATAACAATCGCAGATGGTGGATCAGGATATACTTCAACTCCAACATTAACTTTCTCAGGTGGTGGTGGAATCGGAGGTACACTACAAGCTGATATTCAATCAGTTGATGGAAATATTACATCTAGCGGATCTGGATATACTGCAGGAACATATAACAACGTTGCTTTTACAGGCGGTAGTCCTACTATAGTTGCAACTGCAGACTTTACAGTTCCTGGTTTTAGTGGAACTATAACAAACGCAGGATCTGGATATACAAGTGGAAGTTATACAGTCACCTTTAGAAATACTCCAACTGCAACATACACTGTTACTGTTGCTCAGAGAGATAAATTATCAATCTCAGGAATTACTGGAACATTTGCTGTAGGAAACACTGTAACTGGTTCAGTATCTGGTGCGAGTGCAACAGTTACATTTGTTGCTTCAGACCAATCATTCTTATATGTAACAGCTGGTTCTTCATTCCAAGATGCTCAAACAGATACTATATCAAACGGTAGTGGTGCATCTGCTGTATTAGATACTCTGGGTGGTGGAATTAACAGATATCTTATAGACCTAGGATCGGGAGCACAGGAAGCACCATCATTTACATTCTTAGATAACAACACATATCGTTTTGATACAACTGATACCTCAAACCTTAACCACCCATTAGAAATTACTAGTGTTGTAGGTATAACAACAAGACAATACAGAACACCAGGAACAGCTGGATCATATTTTGAGGTGGTTGTTGGTTCTGCATCTTCTAACTCAACATCAACAACATATACTTGTACCGTTCATGGTATAGGAATGTCTGAGGATTCTGTAATTACCATTGCAGCTGGTGCATTAGGTGATGCGGGTGATCAGATGACTGCAACTGCAGTTGTTACAGGTGGTGCAGTTACCTCTATTACAATCTTAACTCAAGGAACAAACTATGCATTAGGTGATGTTTTACTTATTGATGAAGATGATCTTGGAATTAACTCTGGTGGATCAGGTTTCCAATATACTCTAAACGCAAATAATACTGGTATTTCAACTGTATCAAATATATCTTTGAATGGTACTGGATATGCTGTTAATGATGTTCTTAGTGTAGATGACGCAACTGTTGGTGGTGGAGGTGGATCTGGATTCCAATTCACAGTCACTAAGGTAGGTTTCTGTAGTGCAGTAACTGTAACATCACCAGGTACTGCATTTGAGGCATCTGATACTTTAATCTTAGGTGATGTTGGTGGTGCGGGTGTAGCACAAGGTACTGGTTTAACAGTTACTATCGCAACCATAGTAAGTGAAAAGAACCTAGAGATGACTCAGCAGGGTATTATGACCCTAGGACCTGCAGGATCAAGTCAATTAATATTAAATCCAGATGGTAGTATTGCTGCTACATCATATAATATTGCATCATCTGGACAAGCATCATTTAACGGTGGTGTTTCAACAAGCACTGGAACCTTTACAGGTGTATTAACAGCATCTTCTACATCGGCATTTACTGGATTAGCAACATTTAATGGTGGTCTAACAACTGTAGGAGCTACAACTCTTGTTCAGACTACTGCTAAATTTGCAGATGGTTTGGCAGCAACACCTTCTATATCTTTTGATAACTCAGCAACAACTGGTCTATTCAGACAAGCAGCAGATGTTATTGGAGTTTCAATTGCAGGAACCGATAAATTTAGATTTGATACAAATACATTTGATACTCCTAAACTTCAAGTAGATAGCACATTAGGAAGTACAACTCCATTCTTTAAAGTTGATCCAACAACTTTAAATGTATTGATAGGAGGAGCAACTAATCAGTTATCCTTAGATAATTCAAATACAATAAAATCTGTAGGTACAAATATTGATATCCCACTAAACTTTGAAACCAAAGGTGGTGGAGACTTTGTATTTAAAGGTGGAACTGATAAAACATTTAGTATTACTGATGGAACATCTGATGTTGTAACAGTTGATACTGCTACAGGAACTGCATTGTTCGGTGGAAACTTAGATGCGGGTAAGTTACGTATTAGGCAAAACGTAGTACAAAACAATAGTTCTACTGCAACCAGAGCATTTGGTGAGATTACTGCATTGACAGTAACAGGAACTGGATCAGGATATACAGACGGAACATATACAGCAACTGCAACAACATCTAATAACTCTGGAACTGGATGTACAGTTACATTAACTGTTGCTTCTGGAACATTCTCAGCAGTGACTATTGTTGCAAAAGGTCAAAACTATAGAGTAGGAGATCTTCTTACAATCACAGCAGCGGGTGGTGGAACAGGTTTATCAGTAACAGTATCAGATATTGATGGTCAAGGTGTTGTATTAAAACCAGTTCAAGGGTCTAGTGTATTAGTTGATAGCACTGGTTCTCTTATAATTCCATCAGGTACTACAAACGAACGTCCTAATACCTTAGATCGTATTACAGGTGCTATCAGATTTAACTCTTCACAGTTACAGTTTGAAGGATTCAATGGAAATGACTTTGTTTCTCTTGGTGGTGTTCGTGACGTTGACCAAGATACTTACATCTTAACTGAGTCTGCACCAAGTGCTGATGAAGATACATTTGAGTTCTATGCAGCTGGTATTAATAACATTTCTCTTAATAATACCACACTGACATTCAGACCCAATATGACTACCACAAAGTATGATGCATCTCATCTTGCTACGATTGATGGTGGTTATACTTTAAACGGAACAACATTTGGAACCAATCCATTCCAAGTTTCTAACCTTGGATCTAGTGTATTTTCAGTTAGAAGTAAAAATGATATTGAAGTCAATGGTGGTTTAAGATTCCGTAACGTTCCTTCTCAGGGTGTTGCTTCTAGTATTGACGCAGCAACTATTACACAAACTGCTACTGCATATACTGCATCAACAACATTCACTGCTGTTGGAACTACTGCACAGATTGAGGGTGCAGGATTAACTGTCAATGTTACAACTAACGGTGCAGGAACAATCACAACTATTGCAATTAATGCGGGTGGAACAGGATATGAATCTGGGGAAACAATACAGATTGCAGGAACAGCACTAGGTGGTCTTTCTCCTGATAATAATGTCACATTTAAACTTGATGGTATTACAGGTGGATCTACTGCAATCGCTAGATTGGATGTTCTGCAGCAAGAGTATATAACACGGATGGATTCTAAACCATTCATCAATATAGATGCTATTGGAGCAGAAACAGGATGGAAGATAAACAGAGGATGGAACGCAGGAACAGAATCATACTTAACAGTATTTGATTCTACTGCAACATTCATGGAACTAGATGACTGTCGTGTAGAAGGTGGTGAATTAACATCATTCCCAACATCTGCAACAATCACTGCATTTGATAAATCACAATTCAAAGGATCAAAAACACTTGTAACTATTGAGAGTGATGACAATAAAGTTCATATGCTTGAGGTTACAGTTGTCTGTGCATCAAATGGAACCACTGCACATGCCACTGTTACAAACTCAATAACTTCTGACAATGATCTCATGGATGCAACTGTTGCTGTTGTTGGTACTAACGTGAATATCTCACTAGCAAAATCTAGTGCTGCTACATCATCATCAAACTTCACTGGTAGATTTACAACTACCAAGGTCAAGGTATAA

Genome Context

Title	Authors	Date	PMID	Source
The Genome Sequence of Cyanophage M4-259	Henn,M.R., Sullivan,M.S., Osburne,M.S., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Erlich,R., Young,S.K., Koehrsen,M., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Borenstein,D., Chen,Z., Engels,R., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heiman,D., Hepburn,T., Howarth,C., Jen,D., Larson,L., Lewis,B., Mehta,T., Park,D., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., Walk,T., White,J., Yu,Q., Coleman,M.L., Huang,K.H., Weigele,P.R., DeFrancesco,A.S., Kern,S.E., Thompson,L.R., Fu,R., Hombeck,B., Chisholm,S.W., Haas,B., Nusbaum,C., Galagan,J. and Birren,B.	2011-09-23	—	GenBank

Protein

Domains

Domains [InterPro]

Domains [InterPro]

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

3D Structure with Domain Coloring

Domain Coloring

Taxonomy

Coding sequence (CDS)

Coding sequence (CDS)

Genome Context

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)

Model Confidence

Literature