Protein

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Genbank accession
ABP87948.1 [GenBank]
Protein name
tail tube B
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,66
Protein sequence
MGAVLQKIPNLLGGVSQQPDPVKLPGQVREAENVYLDPTFGCRKRPATKFVGELATNLPSDTRWFPIFRDAGERYAVALYKDGSGNTQVRVWDMQTGAERTVTPDATATAYLATTNLNNLNWLTVADYTLLSNKERIVTMSGASEVDSNQRALVEINAISYNTTYSIDLDRDGASQQVKVYRAKALEISPGSFEVEDGGVCTEHDVQNYTNQTIGSSTGLAFQVRVQCAAYLENNEYRSRYNVSVVLQNGGTGFRKGDMITVNLNGRDYNIRVTQEEFVYTYASDGTAAHTTPQDSTAGTLDIGQITAGLVNSVNLISNYSAQAVGNVIEIERTDGRDFNLGVRGGATNRAMTAIKGTANSIVDLPGQCFDGFELKVINTENAESDDYYVVFRSAAEGIPGSGSWEETVAPGIERGFNTSTMPHALIRQADGNFTLEALNDEGTITGWAQREVGDDDTNPKPSFVGRGISDMFFYNNRLGFLSEDAVIMSQPGDYFNFFVTSAITISDSDPIDVTASSTKPAILRAAIGAPKGLILFAENSQFLLASQEVVFSTATIKLTEISDYFYRSLAKPVSTGVSIAFVSEADTYSKIFEMSIDSVDNRPQVADITRIVPEYVPTGLTWSVSTPNNSMMLFGDNSNTAYIFKFFNQGNERQVAGWSKWILPGEQRMCGFFADTGYFVLYDSTTGSYVLSAMELLDDPDSASIDTAFSSFLPRLDNYVVKSDLTVVDNGDGTLTVDLEAGQAMTGATPVIMFTDGPSEFAFSQPTITAGQFTVDTTDDFVVGFKYETKITLPGFFTSEENKADRVYAPIVEFLYLDLYYSGRYQIEVDRIGYDTINIDAGSIDANIYLADGAPLKEIATENVPLFTPGDQVTVTIKAPDPFPSAITGYSWQGHYNRRGIAFI
Physico‐chemical
properties
protein length:905 AA
molecular weight: 98817,70160 Da
isoelectric point:4,42096
aromaticity:0,10608
hydropathy:-0,19381

Domains

Domains [InterPro]
IPR058003
TTP
1–175
IPR058003 IPR058003
DC_1232
STR
135–289
DC_1232
ABP87948.1
1 905
Architecture
TTP
STR
TTP
TTP 1-134 | STR 135-289 | TTP 290-901 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
ABP87948.1
1 905
Domain Start End Length (AA) Confidence
N-terminal 1 174 174 0,8983
Central domain 175 378 205 0,3942
C-terminal 379 905 526 0,1506
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-174
Central
175-378
C-terminal
379-905

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage Syn5
[NCBI] 		2914003 Uroviricota > Caudoviricetes > Autographivirales > Voetvirus syn5 >
Host Synechococcus sp. WH 8109
[NCBI] 		166314 Bacteria > Cyanobacteria > Oscillatoriophycideae > Chroococcales > Synechococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
ABP87948.1 [NCBI]
Genbank nucleotide accession
EF372997 [NCBI]
CDS location
range 21668 -> 24385
strand +
CDS
ATGGGCGCAGTTTTACAGAAAATCCCTAACCTCCTTGGAGGTGTCTCACAACAGCCCGATCCTGTAAAGCTGCCCGGCCAGGTTCGAGAAGCTGAAAACGTCTATCTTGACCCCACCTTCGGGTGTCGCAAGCGACCTGCCACCAAGTTCGTTGGTGAGCTGGCTACTAATCTCCCCTCAGATACGCGCTGGTTCCCGATCTTCCGAGACGCTGGTGAGCGTTACGCAGTCGCCTTGTACAAGGATGGCAGTGGTAACACTCAGGTCCGCGTCTGGGATATGCAAACCGGTGCGGAACGTACCGTCACACCCGACGCCACCGCCACAGCTTATCTGGCTACCACTAATCTGAACAACCTTAACTGGTTAACAGTGGCAGACTATACGCTGCTATCTAATAAAGAGCGTATTGTCACCATGTCCGGTGCGTCTGAGGTGGATTCTAATCAAAGAGCCTTAGTAGAGATCAACGCCATCAGCTACAACACCACCTACTCCATTGACTTAGACCGAGACGGGGCCTCTCAACAGGTCAAGGTGTATCGGGCAAAAGCCCTGGAGATCTCACCTGGCTCGTTTGAGGTGGAAGACGGTGGCGTATGTACTGAGCACGATGTCCAGAACTACACCAACCAGACCATAGGAAGCTCTACAGGTCTGGCCTTCCAGGTTCGTGTGCAGTGTGCTGCCTACCTGGAGAATAACGAATATCGTTCCCGCTATAATGTTTCTGTGGTCCTACAGAACGGCGGCACGGGATTCCGTAAGGGTGATATGATCACCGTCAATTTGAACGGACGGGACTATAACATCCGGGTTACTCAAGAAGAGTTCGTCTATACCTACGCCTCTGATGGCACGGCCGCCCATACTACTCCCCAGGACTCAACTGCGGGTACGTTGGATATCGGTCAAATCACAGCTGGTCTGGTTAACTCTGTAAACCTAATTTCAAACTACTCAGCTCAGGCTGTAGGTAACGTTATCGAAATCGAGCGTACAGATGGTCGAGACTTTAACCTAGGCGTCCGAGGTGGTGCTACTAACCGCGCCATGACGGCGATCAAAGGTACAGCTAATAGCATCGTAGACCTCCCTGGTCAATGCTTTGATGGATTTGAGTTGAAAGTCATCAACACGGAGAACGCTGAATCTGATGACTACTACGTGGTCTTTAGATCAGCTGCTGAAGGTATCCCAGGCTCTGGTAGCTGGGAAGAGACAGTGGCGCCGGGTATCGAGAGAGGGTTTAACACCTCCACCATGCCTCACGCCCTGATCCGCCAGGCCGATGGAAACTTCACATTAGAAGCTCTCAACGACGAGGGAACCATCACTGGCTGGGCACAGAGAGAGGTAGGCGATGATGACACCAACCCTAAGCCATCCTTTGTTGGCCGTGGGATCTCAGATATGTTCTTCTACAACAACCGTCTGGGCTTCCTGTCTGAAGATGCTGTGATCATGTCACAACCTGGTGACTACTTCAACTTCTTTGTCACCTCAGCTATCACGATCAGCGATTCTGACCCCATCGACGTGACCGCCAGCTCCACCAAGCCCGCTATTCTGCGTGCTGCCATTGGTGCCCCTAAAGGTCTCATCCTGTTTGCAGAAAATTCACAGTTTTTACTTGCATCGCAGGAAGTCGTCTTCAGTACTGCAACTATAAAATTAACAGAAATTAGCGATTACTTCTATAGAAGTCTGGCTAAACCTGTATCTACGGGTGTTTCTATTGCGTTCGTGTCTGAAGCCGATACATACAGCAAGATATTTGAGATGTCTATTGATTCTGTGGACAACCGTCCTCAGGTTGCAGATATCACCCGAATCGTCCCTGAGTATGTGCCGACAGGTTTGACATGGTCAGTATCTACACCTAACAACAGCATGATGCTGTTCGGTGATAACTCCAACACGGCCTACATCTTCAAGTTCTTTAACCAAGGCAACGAGCGTCAAGTGGCAGGGTGGTCTAAGTGGATCCTCCCCGGCGAGCAGCGTATGTGCGGCTTCTTTGCTGATACTGGCTACTTCGTCCTGTATGACTCCACCACCGGCAGCTACGTCCTGTCTGCTATGGAGCTCCTGGACGATCCAGACTCCGCTAGCATCGACACAGCCTTCTCAAGCTTCCTACCTCGTCTGGATAACTATGTGGTCAAGTCTGACCTCACTGTGGTTGACAATGGCGACGGTACTCTAACCGTGGATCTGGAAGCTGGTCAGGCTATGACCGGTGCCACCCCTGTGATCATGTTTACAGATGGCCCCTCTGAGTTTGCCTTCTCACAACCCACCATCACGGCTGGTCAGTTTACTGTAGACACTACAGATGACTTCGTGGTCGGCTTCAAATATGAGACCAAGATCACACTCCCTGGATTCTTCACTAGCGAAGAAAACAAGGCCGACCGGGTCTACGCCCCAATTGTAGAATTCTTGTATCTGGACCTGTATTACTCAGGTCGTTATCAGATCGAAGTCGACAGAATTGGGTATGACACGATTAACATTGATGCTGGTTCCATCGACGCTAATATCTACCTGGCAGATGGTGCTCCCCTTAAAGAGATCGCCACTGAGAATGTCCCCCTGTTTACCCCAGGTGATCAGGTGACAGTGACCATTAAAGCCCCCGACCCATTCCCCTCAGCCATCACCGGCTACAGCTGGCAGGGTCATTACAACCGCAGAGGCATTGCCTTTATCTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
516ff57374242b73d272f108c44f40d8de5c9a6e4c59703eae1e6c2ae5362e9c
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8137
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genome sequence, structural proteins, and capsid organization of the cyanophage Syn5: a 'horned' bacteriophage of marine synechococcus Pope,W.H., Weigele,P.R., Chang,J., Pedulla,M.L., Ford,M.E., Houtz,J.M., Jiang,W., Chiu,W., Hatfull,G.F., Hendrix,R.W. and King,J. 2007 17383677 GenBank