Protein

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Genbank accession
XJP11678.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence RBPdetect
Probability 0,91
Protein sequence
MDYKLFGTSAVPQLARLFAQSTADDKSCYLVKLNAGYVEADLNKCLNFQPQTGAGYMFDAALAASTGICTVIAKGTNCVRTIDRKKITVSDCALTATAEGVPTHLILGGILPVCLTVGTDVTLLYPDLNVKYDPNGYKTQISILSFNIPLANMWVENSLATWLPGNEVTAFDANAFNTGSFFDYIGNQYGMSGDVKLVANGINMGTTGVLQYNNSNIVDVSKSFTIECDYAQTSDTDFAEWQPLRYYSTLTNRSILAFDRTTEKAFVVRNNVGDSGTTKVVRDMAPYAALKTTVPVRFKYVYDAVTGTHTIYIDGTQVDTFVYVMKMSNSAAFTVTGGYGSGASASCTAIIDHYSIRQGVY
Physico‐chemical
properties
protein length:361 AA
molecular weight: 39134,84610 Da
isoelectric point:5,23529
aromaticity:0,11080
hydropathy:0,03989

Domains

Domains [InterPro]
DC_0447
STR
1–180
DC_0447 IPR013320
XJP11678.1
1 361
Architecture
STR
STR
STR 1-180 | STR 205-353 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XJP11678.1
1 361
Domain Start End Length (AA) Confidence
N-terminal 1 115 115 0,1084
Central domain 116 314 200 0,2436
C-terminal 315 361 46 0,8899
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-115
Central
116-314
C-terminal
315-361

Taxonomy

  Name Taxonomy ID Lineage
Phage Erwinia phage phB78
[NCBI] 		3236633 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Erwinia amylovora
[NCBI] 		552 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XJP11678.1 [NCBI]
Genbank nucleotide accession
PP942979 [NCBI]
CDS location
range 51054 -> 52139
strand -
CDS
ATGGATTACAAGCTCTTTGGTACTTCTGCTGTGCCTCAGTTAGCGCGTCTGTTTGCTCAATCAACTGCGGACGATAAGTCTTGCTACTTGGTTAAGCTGAATGCAGGTTACGTCGAAGCAGACTTAAACAAGTGCCTGAACTTCCAGCCTCAGACTGGTGCAGGTTATATGTTTGACGCGGCGCTTGCTGCTTCTACTGGCATCTGCACTGTGATCGCTAAAGGCACAAACTGCGTCCGCACAATCGACCGTAAGAAGATTACAGTGTCTGACTGTGCTCTTACTGCTACGGCTGAGGGTGTACCTACGCATTTAATTCTCGGCGGCATTCTGCCTGTGTGCTTGACCGTAGGAACGGATGTGACTCTGCTCTATCCTGACCTGAACGTTAAGTACGACCCGAACGGATATAAGACGCAGATTTCTATCCTGTCGTTTAACATTCCTCTTGCCAACATGTGGGTTGAGAACTCGCTCGCTACGTGGCTGCCGGGAAATGAAGTAACTGCGTTCGATGCCAATGCGTTTAATACTGGTTCGTTCTTTGATTACATCGGCAACCAATATGGCATGTCTGGTGACGTTAAGCTTGTGGCTAATGGTATCAACATGGGTACCACCGGTGTGCTGCAATACAATAACAGCAACATCGTTGACGTAAGCAAGTCATTCACCATTGAGTGTGACTATGCCCAAACGTCAGACACGGACTTTGCTGAATGGCAGCCTTTGCGTTACTATTCGACTCTGACCAACCGCAGCATCTTAGCGTTTGACCGCACCACAGAGAAAGCCTTTGTAGTGCGCAACAACGTTGGCGATAGCGGTACAACGAAAGTCGTGCGTGATATGGCTCCGTATGCTGCGTTAAAAACTACCGTGCCTGTTCGCTTCAAGTACGTGTATGATGCAGTTACTGGTACGCACACTATCTACATTGACGGCACTCAGGTTGATACCTTTGTGTACGTGATGAAAATGTCCAACAGCGCTGCGTTCACTGTTACTGGTGGTTACGGTTCTGGTGCATCTGCTTCCTGCACGGCCATCATCGATCACTACAGCATTCGTCAAGGAGTCTACTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
88f640f859eeee8896fb4f5379f621becb83458dfb30a56ba740bb7f108352a8
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5478
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of Erwinia phage phB78 Yang,L.Y., Zheng,Y.Y. and Cui,B.M. 2013-12-26 — GenBank