Protein

View in Explore
Genbank accession
WVO01609.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,78
TF
Evidence RBPdetect2
Probability 0,78
Protein sequence
MSISFNHPKNTVTSTGSLNLIVSTGNPTSPQPIRLNATSVIMPVRALPSGEAGAMVFDTGTKTMKYHNGLSWVEMLGQDTILQPIYTEINNINQKLGTKVDSVTYNSGSVPQASISGTQLSITFPISSGGSTGNNGLFTSSKQGSIQMYALSDGMTAATIREQMSGKSGGQNGRNGSQSSPFISNDGWCFADGMWWTWEGESGTITQRVPNLNQQAYLKPMSVSGAIQIGSVIASSAAIGGTSLTIAQLPPHSFNVSGQTDAAGDHVHTFPLSNQRSGTGWADGATPNRYDGDGRTNSGGIHIHTFNGTTNTLGSGQPHSHSISNLDVNHFNVAVIYNIATPSFALNESAANGKYVLKTGDTMTGSLTIATAATIKGNDSNLTMSWRNSSNAERAMIYHSSTNNTLRFRTNGGTEMTMKN
Physico‐chemical
properties
protein length:420 AA
molecular weight: 44289,55650 Da
isoelectric point:7,90713
aromaticity:0,06667
hydropathy:-0,34976

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WVO01609.1
1 420
Domain Start End Length (AA) Confidence
N-terminal 1 253 253 0,4712
Central domain 254 409 157 0,0082
C-terminal 410 420 10 0,9835
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-253
Central
254-409
C-terminal
410-420

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage PHA46
[NCBI] 		3117424 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Salmonella enterica subsp. enterica serovar Typhimurium str. ATCC 14028
[NCBI] 		1299114 Pseudomonadota > Gammaproteobacteria > Enterobacterales > Enterobacteriaceae > Salmonella > Salmonella enterica

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WVO01609.1 [NCBI]
Genbank nucleotide accession
PP191103.1 [NCBI]
CDS location
range 245764 -> 247026
strand +
CDS
ATGAGTATTAGTTTTAATCATCCTAAGAATACGGTGACTAGTACTGGATCATTGAATTTAATTGTAAGTACTGGTAATCCTACATCACCACAGCCAATTAGATTAAATGCCACATCAGTAATTATGCCAGTACGTGCATTACCATCGGGTGAAGCAGGTGCAATGGTATTTGACACTGGTACTAAAACCATGAAGTATCATAACGGTTTGAGTTGGGTTGAAATGTTAGGTCAAGACACAATTTTACAACCAATTTATACTGAAATAAACAATATTAATCAAAAGTTAGGCACTAAAGTAGATAGTGTAACATATAATTCTGGTTCTGTTCCACAGGCATCTATTAGTGGCACACAGTTAAGTATCACATTCCCTATTTCTAGTGGTGGTAGTACTGGCAATAATGGTTTGTTCACTTCATCTAAACAAGGCAGTATTCAAATGTACGCATTGTCTGATGGTATGACTGCTGCTACTATACGTGAACAGATGAGTGGTAAGAGTGGTGGACAAAATGGAAGAAACGGTTCACAAAGTTCACCATTCATTTCTAATGATGGTTGGTGTTTTGCTGATGGAATGTGGTGGACATGGGAAGGTGAAAGTGGTACAATAACTCAACGAGTACCAAACTTGAATCAACAAGCATACCTTAAACCAATGTCAGTTAGTGGTGCGATCCAAATTGGTTCTGTTATTGCATCATCTGCTGCAATCGGTGGCACTTCGTTAACAATCGCACAGTTACCACCTCACAGCTTTAATGTTAGTGGACAAACTGATGCTGCTGGAGATCACGTTCATACTTTCCCACTATCAAACCAAAGATCAGGTACTGGTTGGGCTGATGGTGCGACACCAAACCGATATGATGGTGATGGTAGAACTAATAGTGGTGGGATTCACATACATACATTCAACGGAACTACTAATACTTTGGGTTCTGGTCAGCCTCATAGTCACTCCATTAGTAACTTGGATGTAAACCACTTTAATGTAGCAGTAATTTATAATATTGCAACTCCTAGTTTTGCATTGAATGAATCTGCCGCTAATGGAAAATATGTACTAAAAACTGGTGATACTATGACTGGTTCACTAACAATTGCAACGGCTGCAACCATAAAAGGTAACGATTCGAATCTTACAATGTCATGGCGTAATAGTTCTAATGCTGAACGTGCTATGATTTATCATAGTTCGACAAACAATACCCTACGATTCCGTACTAACGGGGGTACTGAAATGACAATGAAGAACTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
4fc800ac4c3c552d86e056c3869bee3b42ec744d66d0c8b6952158ac9fdf37ec
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6377
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization and efficacy of Salmonella phage PHA46 cocktail in the control of Salmonella Newport and Typhimurium internalized into cherry tomatoes Arista-Regalado,A.D., Viera-Segura,O., Aguilar-Montes de Oca,S., Hernandez,L., Gonzalez-Aguilar,D. and Barba-Leon,J. 2024-07 — GenBank