Protein

View in Explore
Genbank accession
QGZ18028.1 [GenBank]
Protein name
putative structural protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,75
Protein sequence
MPTQGASITVQGGLDLVSSSHALFRTPGAATKLQNFESSTTGGYRRISGYKKFGGSSGVIPSGVSTESIEGLFPYANGVIVCQGDDIYWSTTGTSYTQINKDTYKTKTGTVSVTAGSATVTGSGTAFTTEFAANDRIQINNVNYRVLSITSDTVLTLDFNVVSTASGQAVKKSGMSSSDLSSATVVARTNQSNIQFVNYTSEGTYGTVYITDGANKIAEFQIELDSGSNVFYFETLERSTPINPKRCTIFSERLIVAGQSDADSTVAYSTRLKPYDFTGASAGTIDTGDVIVGIKVFRNSLVIFCKNSIYELTNLDSTPILKSVTKNIGCVDGNTIQEIGGDLVFLAPDGLRTIAGTARIGDVELSSISRKILPLINELLDNISSFTISSMVIRERSQYRLFYFQSGQAASSQKGIIGTFKFDANGVPAFEWSETLGMEIKRCTSDLDVNNKEVQFGSNESGYVYQLDTGNNFDGSTIDAQFQTPDMDYGDNGLRKSLYAVKANIEPEGTNNNLKLLIRYDFESTEVPQPDSFNVGNLSSAAVFGASSSVFGTSVFGAVVLPSKRMIVTGSGFSNNFKFFSNDTDASYSVNGMFVSFIAGGRR
Physico‐chemical
properties
protein length:603 AA
molecular weight: 64683,21120 Da
isoelectric point:4,97872
aromaticity:0,09950
hydropathy:-0,13101

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QGZ18028.1
1 603
Domain Start End Length (AA) Confidence
N-terminal 1 83 83 0,7950
Central domain 84 289 207 0,1438
C-terminal 290 603 313 0,3373
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-83
Central
84-289
C-terminal
290-603

Taxonomy

  Name Taxonomy ID Lineage
Phage Pelagibacter phage HTVC104P
[NCBI] 		2686459 No lineage information
Host Candidatus Pelagibacter sp. HTCC7211
[NCBI] 		439493 Pseudomonadota > Alphaproteobacteria > Candidatus Pelagibacterales > Candidatus Pelagibacteraceae > Candidatus Pelagibacter >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QGZ18028.1 [NCBI]
Genbank nucleotide accession
MN698243 [NCBI]
CDS location
range 41631 -> 43442
strand -
CDS
ATGCCAACACAAGGAGCTTCCATTACAGTACAAGGTGGATTAGATTTAGTATCTAGTTCTCATGCATTGTTTAGAACACCAGGTGCTGCAACTAAATTACAAAACTTTGAATCTTCTACAACTGGTGGATATAGAAGAATAAGTGGTTATAAAAAATTTGGTGGTAGTAGTGGAGTAATTCCATCAGGAGTTTCAACAGAATCTATAGAAGGATTATTTCCTTATGCAAATGGTGTAATAGTTTGTCAAGGAGATGATATTTATTGGAGTACAACTGGTACAAGTTATACTCAAATTAATAAAGATACTTATAAAACTAAAACAGGAACAGTTTCTGTAACAGCAGGTAGTGCTACAGTAACTGGAAGTGGTACAGCTTTTACAACAGAGTTTGCTGCTAATGATAGAATACAAATTAATAATGTTAACTATAGAGTATTATCTATAACAAGTGATACAGTATTAACTTTAGATTTTAATGTAGTATCTACTGCAAGTGGACAAGCTGTTAAAAAAAGTGGTATGTCTTCTTCAGATTTATCTAGTGCAACAGTAGTAGCTAGAACAAATCAATCAAATATTCAATTTGTTAACTACACATCTGAAGGTACTTATGGTACTGTTTATATTACAGATGGTGCTAATAAAATAGCTGAATTTCAAATAGAATTAGATAGTGGTTCTAATGTATTTTATTTTGAAACATTAGAAAGGTCTACACCTATTAATCCTAAAAGATGTACAATATTTTCTGAAAGATTAATAGTAGCTGGACAATCAGATGCCGATAGTACAGTTGCATATAGTACTAGATTAAAACCATATGATTTTACTGGTGCTTCTGCAGGTACAATAGATACTGGAGATGTAATTGTAGGTATAAAAGTATTTAGAAATAGTTTAGTCATATTCTGTAAAAATAGTATTTATGAGTTGACAAACCTAGATTCTACCCCTATACTTAAATCAGTAACCAAAAATATAGGTTGTGTAGATGGTAATACAATCCAAGAGATAGGTGGAGATTTAGTATTCTTAGCACCTGATGGATTAAGAACTATTGCTGGTACAGCTAGAATTGGTGATGTTGAATTAAGTTCTATAAGTAGAAAAATATTACCACTTATAAATGAGTTACTAGATAATATATCTAGCTTCACTATATCTAGTATGGTCATTAGAGAACGAAGTCAATACAGATTATTTTATTTTCAATCTGGTCAAGCAGCTTCTTCTCAAAAAGGAATTATAGGAACTTTTAAATTTGATGCTAATGGTGTTCCTGCATTTGAATGGAGTGAAACACTTGGCATGGAAATTAAAAGATGTACTTCAGACTTAGATGTAAATAATAAAGAAGTGCAATTTGGTTCTAATGAATCTGGATATGTGTATCAATTAGATACTGGAAATAATTTTGATGGTTCTACAATAGATGCACAATTTCAAACACCAGATATGGATTATGGTGATAATGGTTTAAGAAAAAGTTTGTATGCAGTTAAAGCAAACATAGAACCAGAAGGAACAAATAATAATTTAAAATTATTAATAAGATATGATTTTGAATCAACTGAAGTTCCACAACCAGATTCTTTTAATGTAGGTAATTTAAGTAGTGCTGCAGTATTTGGTGCAAGTTCATCAGTATTTGGTACATCAGTATTTGGAGCAGTAGTATTACCAAGTAAACGAATGATTGTAACTGGAAGTGGTTTTTCAAACAACTTTAAGTTTTTTTCAAATGATACAGATGCATCATATTCAGTAAATGGAATGTTTGTATCATTTATAGCAGGAGGAAGAAGATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
74b3534eeff8fa63c9f1ff3e00e65e5cbeb8d647854cbd1560cd2386fe177aa1
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8817
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Novel pelagiphages prevail in the ocean Zhang,Z., Qin,F., Chen,F., Chu,X., Luo,H., Zhang,R., Du,S., Tian,Z. and Zhao,Y. 2019 — GenBank