Protein

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Genbank accession
XKC19577.1 [GenBank]
Protein name
putative tail tip protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MTIMVAYPYDPAGTRDECHIQDESHIILTNDNTYRVIVPEMAPFYTTDLSIIHAESGLELKEGKDYNLGYRLLSAKKIAQRDLFGCIVLINPQLKGEFILEYRTVGGNFVGIRSNVLTYLANALNDPVKTPFEKVIDRPAYFTPAKHEQHYADFVNKDGVADELDGLADAIDEAIENAGTDAVNDLMSRINSVDSLLNQFRQDNHIVDYGNPHETTAKQARALEKGAAAVDSFRAYNKTLVELADYINARGITEADVSKYLAKFGDQVYDDRLTLKDGQAVIRSESGTTSIDLSSGQITISADDLLAFMADSDVVSIGESLKFMAGANVLEIISNGRNGRRMDKILYNGHEVIHGGTVKEKLKDKGNLGMRVMTEDTETVKWEGTGREGSPLKARLTLPVATLTKRGTVRLTNSRTANNRTQAPTPYVLNVMRKDAETKVPKARVVNGHPMTGNFSLDKDDIDLSNVDNTSDVEKPISIDQQRLLDQYSDGEHTHDLTGVELKRATETTLGVVTHAEDIADMSESSVATPKLVQDYANKIVDVATTSQGKLPADVLDVRYWKPTADVTCSGLKITFPANAELYMNRINYSEMVGFQVPAGVVDIAAAYPGAFVNETFYIFINVDGSNITYTAHKEKLTNAAGRLHIATVKCSASDIQNVTAVTGNDHHNYDDNVGGILQVDGVTSVGMFRELEEHEADPTAHIGDGAVGDASTVGLDLIKNYPVVSQISDASHNGIDEWEYYTPWNPEHANEVVTQPRLSNNNGIEVSNGVIITMPWVQTGTQYLAMRNHRIKFNDPNFVSDTLEDGVRKRKVAYILDDNRETGTRGLTNWMTLIGSYSDEAGNVYDLVIMHSLRFYDEKQVWLRVYKNGVFERSIAHVNVGNWKMAPQHARNYLIISYWETSDGFVYDIEYQHDAMEISSKIDIVNVFLAFRDNDFDMRVDMKQYGKGIKLFSGDGEVMGAGYVNGNIKKAAESGIIGFAGNPSDTGTIGTSEALTLYVDCIAADEGNMEEKYITAKGVYQSLRDGVNLLVAQGTVAHDAELPLLAHCRYLNVYLGWHSLGNSTVDDPIDGLNFQLRSVINDRVLTGSRIDMLTLDRYMYVECRYKTESDGGAAALTKNGQCNFLLAGLRDV
Physico‐chemical
properties
protein length:1133 AA
molecular weight: 125137,79430 Da
isoelectric point:4,97690
aromaticity:0,07944
hydropathy:-0,32127

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XKC19577.1
1 1133
Domain Start End Length (AA) Confidence
N-terminal 1 710 710 0,9439
Central domain 711 998 289 0,7540
C-terminal 999 1133 134 0,7482
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-710
Central
711-998
C-terminal
999-1133

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage pVp-JHP1101
[NCBI] 		3374749 No lineage information
Host Vibrio parahaemolyticus SNUVpS-1
[NCBI] 		1234128 Pseudomonadota > Gammaproteobacteria > Vibrionales > Vibrionaceae > Vibrio > Vibrio parahaemolyticus

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XKC19577.1 [NCBI]
Genbank nucleotide accession
PQ451753 [NCBI]
CDS location
range 97611 -> 101012
strand -
CDS
ATGACAATCATGGTCGCTTATCCCTACGACCCGGCAGGTACTAGGGATGAGTGCCATATTCAGGATGAAAGTCACATTATCTTGACTAACGATAATACCTACCGTGTTATCGTGCCTGAGATGGCACCGTTCTACACCACAGACTTATCGATTATCCATGCTGAGTCTGGGTTAGAATTAAAAGAAGGGAAAGACTACAACTTAGGTTACCGTCTTCTCTCTGCAAAGAAAATCGCTCAACGTGATTTGTTTGGATGTATTGTACTTATTAACCCGCAGTTAAAAGGGGAATTCATTCTTGAGTATCGTACTGTTGGTGGTAACTTCGTTGGTATTCGAAGTAATGTACTGACGTATCTAGCTAATGCGTTAAACGATCCGGTTAAGACGCCGTTTGAAAAGGTTATCGACCGACCTGCTTACTTTACACCTGCTAAGCACGAGCAGCACTATGCTGATTTCGTGAATAAGGATGGTGTGGCTGATGAGTTGGATGGTTTAGCAGATGCTATTGATGAAGCGATTGAGAATGCAGGCACAGACGCTGTCAATGACCTCATGTCGAGAATTAACTCGGTAGATAGTCTACTCAATCAATTCCGCCAAGATAATCATATCGTTGATTACGGGAACCCTCACGAGACGACTGCAAAACAAGCACGTGCGTTAGAAAAGGGTGCGGCTGCTGTTGATTCATTCCGTGCTTATAACAAGACACTGGTTGAGTTGGCAGACTACATCAATGCTCGCGGTATTACCGAAGCAGATGTATCGAAGTATTTAGCGAAGTTTGGCGATCAGGTTTATGATGACCGACTCACTCTAAAAGATGGTCAAGCTGTCATCCGTAGTGAAAGCGGTACAACATCCATTGACCTATCCAGTGGTCAAATCACAATCAGTGCAGATGACCTACTTGCCTTTATGGCAGATAGCGATGTGGTGTCGATTGGTGAAAGTCTTAAGTTCATGGCAGGCGCTAACGTATTAGAAATCATTTCTAATGGACGTAACGGTCGTAGAATGGATAAGATTCTCTATAATGGTCATGAAGTTATTCATGGCGGTACGGTTAAAGAGAAGCTTAAAGACAAGGGTAACCTTGGCATGCGTGTTATGACGGAAGATACCGAAACGGTTAAGTGGGAAGGCACTGGTCGTGAAGGGAGTCCGTTAAAAGCAAGATTGACATTACCTGTTGCCACATTAACGAAACGTGGTACCGTTCGTCTTACTAACTCACGTACAGCAAACAATCGCACTCAAGCACCAACGCCTTATGTTTTAAATGTAATGCGTAAAGATGCTGAAACTAAAGTCCCTAAAGCGCGTGTCGTTAACGGTCATCCGATGACGGGCAACTTTAGCCTAGATAAGGATGATATCGACCTTAGTAATGTGGATAACACGTCTGATGTTGAAAAGCCTATCTCGATTGACCAACAGCGTCTTTTAGATCAGTATTCAGATGGTGAACATACCCACGACCTGACAGGTGTTGAACTAAAGCGTGCTACTGAAACTACACTAGGTGTGGTTACACACGCAGAAGACATCGCAGATATGTCTGAGTCAAGTGTAGCAACTCCTAAGTTAGTGCAAGACTACGCAAACAAGATTGTTGACGTTGCAACAACCTCACAAGGGAAGTTGCCTGCTGACGTATTGGATGTTCGTTACTGGAAACCTACAGCAGATGTAACGTGTTCAGGTTTGAAAATCACATTCCCTGCGAATGCTGAGTTATACATGAACCGTATTAACTACTCTGAGATGGTTGGCTTCCAAGTGCCTGCGGGTGTGGTTGATATTGCTGCGGCATATCCGGGTGCATTTGTTAATGAAACATTCTACATCTTTATTAATGTAGACGGTTCAAACATTACTTACACGGCACATAAAGAGAAGCTTACTAATGCGGCAGGTCGTTTGCATATTGCAACGGTTAAATGTAGCGCTAGTGATATTCAAAACGTGACTGCTGTAACGGGTAATGATCATCATAACTACGATGATAACGTTGGCGGTATCTTACAGGTTGATGGTGTAACCTCTGTAGGTATGTTCCGTGAATTGGAAGAACATGAGGCTGACCCAACTGCACACATCGGCGATGGTGCGGTAGGTGATGCAAGTACGGTAGGTCTTGACTTGATTAAGAACTATCCGGTAGTGAGCCAAATCTCAGATGCAAGCCATAACGGTATTGATGAGTGGGAATACTACACACCGTGGAATCCTGAGCATGCTAATGAGGTTGTTACACAACCACGCCTGTCTAACAACAACGGTATTGAAGTAAGTAATGGTGTAATCATCACCATGCCGTGGGTTCAGACAGGTACTCAGTATTTAGCAATGCGTAACCATCGCATCAAGTTCAACGATCCGAACTTTGTTTCAGACACACTAGAAGATGGTGTTCGTAAGCGTAAGGTGGCGTACATACTTGACGACAATCGTGAGACGGGTACGCGTGGTCTTACTAACTGGATGACCCTAATTGGTTCTTATTCAGATGAGGCGGGTAATGTCTACGACTTAGTAATCATGCATTCATTACGCTTTTACGATGAGAAACAGGTTTGGCTTCGTGTTTACAAGAACGGTGTTTTTGAACGCTCTATCGCTCACGTGAACGTCGGTAACTGGAAGATGGCACCACAGCATGCACGTAACTATCTGATTATCTCCTACTGGGAAACGTCAGACGGCTTTGTGTATGACATCGAGTATCAGCATGATGCTATGGAAATCAGTTCTAAGATTGACATAGTAAATGTGTTCCTTGCTTTCCGTGATAATGACTTCGACATGCGTGTTGATATGAAGCAATACGGTAAAGGCATCAAGCTTTTCTCCGGTGATGGTGAAGTCATGGGTGCAGGTTACGTTAATGGTAACATTAAGAAGGCAGCAGAATCAGGCATTATCGGTTTTGCGGGTAATCCAAGCGATACTGGAACTATCGGTACGTCTGAAGCATTAACCCTATACGTTGACTGTATTGCCGCAGATGAGGGTAATATGGAAGAGAAGTACATCACTGCAAAAGGGGTGTACCAATCATTGCGTGATGGCGTTAACTTGCTAGTTGCCCAAGGTACTGTGGCTCATGATGCTGAACTTCCACTCTTGGCGCATTGTCGATATCTGAATGTGTATTTAGGCTGGCACTCTTTGGGTAATTCAACAGTCGATGACCCTATTGATGGTTTGAACTTTCAATTACGTTCAGTAATTAACGACCGTGTACTTACTGGTTCACGTATAGACATGTTAACGCTTGACCGTTACATGTATGTCGAATGTCGATACAAAACGGAATCGGATGGTGGCGCAGCAGCGTTAACGAAAAATGGGCAGTGCAACTTCTTACTTGCTGGACTGCGAGACGTTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
60de4f305307c932ac967b06207043b6cd2ad31749cbc1ef536ff8612b5c4980
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2787
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome of Vibrio phage pVp-JHP1101 Park,J.H., Kim,S.G. and Park,S.C. 2025-12 — GenBank