Protein

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Genbank accession
AZF89487.1 [GenBank]
Protein name
late competence protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MKNFIDKLDNVKISCCSPRSAYDWDGLTWQELICNVFKGVNECIEFVNTYTEIIREIMKWITNEGLEEEVKKGLDRFIEDGTISEIINGEIFGNIQEKLKELEALIETNQNSIEEIKSDIETLKSEILEEVKKAIKNITERVEKLENTPQPTEIYVLKNAVDYGDCSVIKADDGTFSMIDCMWESNWGALSQQLDKIGVKELKYLFITHYHSDHIGNAPTIINKYKPKFIVYKEGIDFDRLPQVETEWDTKGYFERMIKACKDNGVTEIIANDQELKIGINDTVQLFASHFYDYSNLNAMSVNYMLKSKGVKAVFPGDSAKSTELAIKDKVGKVDWLKLSHHGADGGNSDDWFTSLKPAYGVINRVELYKLDIVKSFALKCIKFGGSVYTNDNNDFCSFRIVDGAIFPTCKEYKFPLQFLDYWDGTYKMTDTTGKIATKGIYPYKSDYYFVKDNGFIAQSQWVNYHGVDYYADSSGRLVRNTFIEGTDNDQPVWYWINEKCEMVLDWTFVNYRNNLYIIKANGMMCDNMTVEYQGDHYRATKGGPLLLNDWFQDGSDWYYFRFDGRMVKNKTMVINGKWYTFGNDGKCTNPDGEPIT
Physico‐chemical
properties
protein length:597 AA
molecular weight: 68860,13970 Da
isoelectric point:4,98065
aromaticity:0,13065
hydropathy:-0,45611

Domains

Domains [InterPro]
DC_1947
ATT
1–186
DC_1947 G3DSA:2.10.270.10 G3DSA:2.10.270.10
SSF58100
Unmapped
32–138
SSF58100 IPR036866 SSF69360
Coil
Unmapped
95–148
Coil IPR036866 IPR018337
IPR036866
STR
160–365
IPR036866 IPR018337
IPR052159
Unmapped
161–363
IPR052159
IPR001279
STR
162–266
IPR001279
AZF89487.1
1 597
Architecture
ATT
STR
ATT
ATT 1-186 | STR 187-378 | ATT 418-590 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AZF89487.1
1 597
Domain Start End Length (AA) Confidence
N-terminal 1 188 188 0,8331
Central domain 189 586 399 0,7893
C-terminal 587 597 10 0,2052
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-188
Central
189-586
C-terminal
587-597

Taxonomy

  Name Taxonomy ID Lineage
Phage Clostridium phage CPD7
[NCBI] 		2483608 Uroviricota > Caudoviricetes > Guelinviridae > Susfortunavirus susfortuna >
Host Clostridium perfringens
[NCBI] 		1502 cellular organisms > Bacteria > Bacillati > Bacillota > Clostridia > Eubacteriales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AZF89487.1 [NCBI]
Genbank nucleotide accession
MK017820 [NCBI]
CDS location
range 14898 -> 16691
strand -
CDS
ATGAAAAATTTCATTGATAAATTAGATAATGTAAAAATTAGTTGTTGTTCTCCTCGTTCAGCTTATGACTGGGATGGTTTAACTTGGCAGGAACTAATATGTAATGTTTTTAAGGGTGTTAATGAATGTATAGAATTTGTTAATACTTATACCGAAATTATTAGAGAAATAATGAAATGGATAACTAATGAAGGCTTAGAGGAAGAAGTAAAAAAAGGATTAGATAGGTTTATAGAGGATGGAACTATATCCGAGATTATAAACGGAGAAATTTTCGGTAATATACAAGAAAAGTTAAAGGAATTAGAGGCTTTAATAGAAACTAATCAAAATAGTATAGAAGAAATTAAGTCAGATATTGAAACTTTAAAATCAGAAATTTTAGAAGAAGTTAAAAAGGCTATAAAGAATATTACTGAAAGAGTTGAAAAGTTAGAAAATACACCACAACCAACTGAAATATATGTGTTAAAAAATGCTGTTGATTATGGTGATTGTAGTGTTATAAAAGCTGATGACGGAACTTTTTCAATGATAGATTGTATGTGGGAGTCAAACTGGGGGGCTTTATCACAACAATTAGATAAGATAGGAGTTAAAGAATTAAAATATTTGTTTATTACCCATTATCATAGCGACCATATTGGAAACGCTCCTACAATAATAAATAAGTATAAACCTAAATTTATAGTATATAAAGAAGGTATAGACTTTGATAGATTACCGCAGGTCGAAACTGAGTGGGATACTAAAGGTTATTTTGAGAGAATGATTAAAGCTTGTAAAGATAATGGAGTTACTGAAATAATCGCTAACGACCAAGAATTGAAGATTGGTATTAATGATACTGTTCAATTATTTGCATCACATTTTTATGATTATAGTAACTTAAACGCCATGAGTGTAAACTATATGCTTAAATCCAAAGGAGTTAAAGCGGTATTTCCGGGGGATAGTGCTAAGAGTACAGAATTGGCTATAAAAGATAAAGTCGGTAAAGTTGATTGGTTAAAATTATCGCATCATGGTGCAGATGGTGGAAATTCTGATGACTGGTTCACAAGTTTAAAACCAGCTTATGGTGTTATAAATAGAGTTGAATTATACAAGTTAGATATAGTTAAAAGTTTTGCTTTAAAATGTATAAAATTTGGTGGTTCTGTTTATACTAATGATAACAACGACTTTTGTTCTTTTAGAATAGTTGATGGTGCTATATTCCCAACATGTAAAGAATATAAATTCCCTTTACAATTTTTAGATTACTGGGATGGAACTTATAAAATGACAGATACAACAGGTAAGATTGCTACTAAGGGTATTTACCCATATAAATCTGATTATTATTTTGTTAAAGATAATGGATTTATTGCCCAAAGTCAATGGGTAAATTATCATGGTGTAGATTATTATGCGGATTCATCAGGTAGACTCGTAAGAAATACATTTATAGAAGGAACTGACAACGACCAACCTGTTTGGTATTGGATTAATGAAAAATGTGAAATGGTGTTAGATTGGACTTTTGTTAATTATAGAAATAATTTATATATAATTAAGGCTAATGGTATGATGTGCGATAATATGACAGTTGAATATCAAGGCGACCATTATAGGGCAACAAAAGGCGGACCGCTTTTACTAAATGACTGGTTTCAAGATGGTTCAGATTGGTATTATTTTAGATTTGATGGGAGAATGGTAAAAAATAAAACTATGGTTATAAACGGAAAATGGTACACATTTGGTAATGATGGTAAGTGTACTAATCCGGATGGTGAACCAATAACTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
9f496a224e6d65c92055adcca87d92745d42c3c4389271d8deb0afd0e2b1bc9c
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8229
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of Clostridium perfringens phage CPD7 Shin,D. and Ryu,S. 2022-11-17 — GenBank