Protein

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Genbank accession
XLG29416.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
Protein sequence
MPYGRKQTNRKHFTVISVGSVSISTSAAAPSAFPTLELKDGSAQFSVDQASNALRNNGLDVGELVGTLSIQPTAGAGNPRTLYVWSEMSMDGVTWTPIERSLRTLDVRSGLSSFVTMNSRGDSFPAGAWVRWQMYADDTITIDTPADVPVGASVATGYSVLWELAEVI
Physico‐chemical
properties
protein length:168 AA
molecular weight: 17975,95000 Da
isoelectric point:4,85834
aromaticity:0,08333
hydropathy:-0,05655

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage PhPV1.2
[NCBI] 		3377109 No lineage information
Host Vibrio parahaemolyticus
[NCBI] 		670 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XLG29416.1 [NCBI]
Genbank nucleotide accession
PQ511476.1 [NCBI]
CDS location
range 37014 -> 37520
strand +
CDS
ATGCCTTATGGTCGTAAGCAGACGAATAGGAAGCATTTCACAGTGATAAGTGTTGGGAGTGTATCCATTAGCACGTCAGCGGCAGCACCGAGCGCGTTCCCCACGCTAGAACTGAAAGACGGAAGCGCTCAGTTTAGTGTAGACCAAGCTTCGAACGCTCTGCGGAACAACGGTTTGGATGTAGGTGAGCTAGTAGGCACACTAAGCATACAGCCGACAGCTGGAGCAGGCAACCCAAGGACACTGTACGTATGGTCAGAGATGAGTATGGACGGTGTCACTTGGACACCTATAGAAAGGTCTCTGCGAACACTAGACGTGCGTAGCGGACTTTCTTCGTTTGTTACAATGAACAGTAGAGGTGACTCATTTCCAGCAGGTGCTTGGGTGCGCTGGCAAATGTACGCAGATGATACGATAACTATAGACACACCAGCAGATGTACCAGTAGGGGCGTCGGTAGCAACGGGATACAGCGTATTATGGGAACTAGCAGAGGTGATATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
9c0e3d1af834dbfaf21e9027330dd8c2b8f20ada07580c989cf865c5fb3b8b1b
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,7885
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genomic characterization of a novel lytic Autographiviridae bacteriophage PhPV1.2 specific to Vibrio parahaemolyticus Keerthi Babu,R., Sobhana,K.S., Aleena,A., Neethu,K.P., Jayasree,V.S., Grinson,G. and Gopalakrishnan,A. 2016 — GenBank