Protein

View in Explore
Genbank accession
QIQ62501.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MSARWREAPVTGGAYSDETRAWTVQDTVNWIPEAAERGGGRSSSMLRCAPGAAVFCVPEAANPAPVRGLHDVEDKLFAVIGTKLWQITTAGVAIPRGTIPGVERVCMAHNQIAGGNQLVIGNGTSGYVYNTYTELLAEQITGEGFPGLKACDYVDSYIVGVEPSGRYWFHSALADATSYRALDRYEAESQPDRIVGLTVIHRTVFVLGKRSGEFFYNSGASEGTFQRHAGTEMQTGCASQHTIQQMGNTVFWLGHDGRVYRLDGYQPVRISTPPLEQAITACNHEEAFAFTFDDRGHQVYYLTFPDGMTWGFDIATREWHRRESFGVSRWRMNACVRWAAHWVAGDFANGKLYTLDWGMPWEHGQVIERRRVNGVLHDHQNRMTVDAVELVFGTDALGGYKGPGDLTPPQPAGPTLSGNAPDAVNKQAYRYAYTMKPGATPIVAVRVVSGALPEGLSLDTKGVLSGTVEVAGLVAGAKRAYPFTIRVTDANGLWACVSDTMTITTAEVICGTSTSYSGGQAFPNIVHVQLGSQTGLVTLAYATASNPDKFQVWIGGQKVIDTGYHGDARYQAQLDADLKNRGLPPETITLRPGGDTTPEGQFANKNYETATFQKTTADTIAEVWVYSPLAGTAWQFHLDCPT
Physico‐chemical
properties
protein length:642 AA
molecular weight: 69833,41890 Da
isoelectric point:5,80556
aromaticity:0,10280
hydropathy:-0,25545

Domains

Domains [InterPro]
DC_1658
STR
6–415
DC_1658 DC_2153
SSF63825
STR
192–358
SSF63825 IPR013783
PF05345
RBD
421–504
PF05345
QIQ62501.1
1 642
Architecture
STR
STR 6-506 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QIQ62501.1
1 642
Domain Start End Length (AA) Confidence
N-terminal 1 550 550 0,6809
Central domain 551 631 82 0,4719
C-terminal 632 642 10 0,9892
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-550
Central
551-631
C-terminal
632-642

Taxonomy

  Name Taxonomy ID Lineage
Phage Xylella phage Xfas53
[NCBI] 		670252 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Xylella fastidiosa subsp. multiplex
[NCBI] 		644357 Pseudomonadota > Gammaproteobacteria > Lysobacterales > Lysobacteraceae > Xylella > Xylella fastidiosa

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QIQ62501.1 [NCBI]
Genbank nucleotide accession
MT084350 [NCBI]
CDS location
range 14465 -> 16393
strand +
CDS
ATGAGCGCCCGATGGCGTGAAGCCCCTGTGACCGGAGGCGCTTATAGCGACGAAACACGCGCCTGGACAGTGCAGGATACGGTGAACTGGATTCCAGAAGCCGCCGAACGTGGCGGAGGGCGTTCATCCTCCATGTTGCGCTGCGCTCCTGGGGCGGCGGTGTTCTGTGTCCCTGAAGCCGCTAACCCTGCTCCGGTGCGCGGATTGCATGATGTGGAAGACAAGCTGTTCGCAGTGATCGGTACGAAGCTATGGCAGATCACCACAGCGGGGGTGGCCATCCCTCGCGGGACCATCCCAGGCGTTGAGCGTGTCTGCATGGCGCACAACCAGATTGCCGGAGGGAACCAGTTAGTGATCGGTAACGGCACCTCTGGCTACGTCTACAACACCTATACGGAATTACTCGCCGAACAGATCACCGGTGAAGGGTTCCCAGGGCTTAAAGCGTGCGATTACGTGGACAGCTACATTGTGGGTGTTGAGCCTTCGGGCAGGTACTGGTTTCATTCCGCCCTGGCCGACGCCACCAGCTACAGGGCCCTGGACCGCTACGAAGCCGAAAGCCAGCCGGACCGCATTGTCGGATTGACCGTGATCCATCGCACTGTTTTCGTGCTGGGCAAACGCTCCGGGGAATTCTTCTACAACAGCGGCGCATCGGAAGGTACTTTTCAACGCCATGCAGGCACTGAAATGCAAACAGGCTGCGCCTCCCAGCACACCATCCAACAGATGGGCAATACGGTTTTCTGGCTGGGACATGATGGCCGTGTGTATCGGCTAGACGGCTATCAACCGGTTCGAATCAGCACACCGCCGCTGGAGCAGGCCATCACCGCGTGCAACCATGAGGAAGCATTTGCGTTCACCTTTGATGACCGTGGGCATCAGGTGTACTACCTGACCTTCCCCGATGGGATGACCTGGGGGTTTGATATAGCAACCCGGGAATGGCATCGCCGAGAGTCCTTCGGGGTCAGCCGTTGGAGGATGAACGCCTGTGTACGGTGGGCCGCCCACTGGGTGGCTGGCGATTTTGCAAACGGCAAGTTGTATACCCTGGACTGGGGGATGCCGTGGGAACACGGCCAAGTGATTGAGCGCCGCCGTGTGAATGGCGTTCTGCACGACCATCAGAACCGCATGACCGTAGATGCCGTGGAGCTTGTGTTCGGCACAGATGCCCTTGGCGGCTACAAAGGGCCGGGCGATCTCACCCCCCCACAACCGGCAGGGCCTACGCTCAGCGGCAACGCACCAGATGCGGTGAACAAACAGGCGTACCGCTACGCCTACACCATGAAACCTGGTGCAACGCCCATTGTGGCAGTACGTGTAGTGAGCGGTGCGCTCCCCGAAGGGTTGAGCCTTGATACTAAAGGCGTGTTGTCAGGCACCGTGGAGGTGGCGGGGCTGGTTGCCGGAGCCAAGCGCGCTTACCCCTTTACGATTCGCGTGACCGACGCGAACGGACTGTGGGCCTGCGTGAGCGACACGATGACAATCACGACCGCCGAGGTGATTTGCGGTACCTCCACCAGCTATAGCGGAGGGCAAGCGTTCCCGAACATCGTGCATGTGCAGCTTGGAAGCCAAACGGGGCTTGTGACGCTCGCCTACGCCACCGCCTCCAACCCTGACAAGTTCCAGGTGTGGATCGGCGGGCAGAAGGTCATTGATACGGGCTACCACGGCGACGCCAGATATCAGGCGCAACTGGATGCAGACCTTAAAAACAGGGGGCTACCCCCAGAGACCATTACCCTGAGGCCGGGGGGCGACACCACCCCAGAAGGCCAGTTTGCCAACAAAAACTACGAAACAGCCACGTTCCAAAAAACCACCGCCGATACGATTGCCGAGGTTTGGGTGTACTCACCGCTGGCGGGGACGGCGTGGCAATTCCACCTGGACTGCCCAACATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
28408847c1533c8e526d74786dc89d52352150cbf58d3ccd33766a9cb7e2b44c
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8410
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete circularized genome data of two Spanish strains of Xylella fastidiosa (IVIA5235 and IVIA5901) using hybrid assembly approaches Arias-Giraldo,L.F., Giampetruzzi,A., Metis,M., Marco-Noales,E., Imperial,J., Velasco-Amo,M.P., Roman-Ecija,M. and Landa,B.B. 2020-05 — GenBank