Protein

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Genbank accession
XXJ63385.1 [GenBank]
Protein name
tail collar fiber protein
RBP type
TF
Evidence RBPdetect
Probability 0,81
TF
Evidence RBPdetect2
Probability 0,71
Protein sequence
MSGTNIFTHVSDEAQYVYLQPFVSPGAAFESGGDVQSILEQIDPSALAELPPLPYATSTELGAVEYSTQAEANALDDLLTVLTPETLDGVDQFVSPATDTQLGNLQELRTIDLTRTYASSDASRLLSYRRLEEMMTVRNALDDDTTDQSRGFSQFATLAESLSYAPNRFISPMRTWNLIKTEIPNPWSQATEALKGVVRTVGPGDANKSDASIAISVKGLNYVSAAKAKRGAFKLTQNNYDRNASDANEYAITPNTIDNLLGTSDKHGFFQLPATYVNDSTQVTSAALGYDLADKLGPTGGTITGTLQCDNIISKLVTRQKQTNYNGTYYVNVTENREMFPNDQLDGKIGLAGRPIGSIFHCTANVDPNTLFGGVWYRITGGQTMMGQGTGNDGLRKRFFSAGSTRNDSRVTLSESQLPKHSHKSWGEAYTGSKSQCIKYDEIRNPYGVTYKCTQYSYVDYWPFGYTGSRNNVGMGATDHDNYMYYTSPVGGNQAHENMMPFYAVYIWRRVK
Physico‐chemical
properties
protein length:512 AA
molecular weight: 56320,81860 Da
isoelectric point:5,22836
aromaticity:0,10156
hydropathy:-0,47754

Domains

Domains [InterPro]
DC_0176
STR
1–463
DC_0176
IPR053827
ATT
355–511
IPR053827
IPR044916
STR
374–500
IPR044916
XXJ63385.1
1 512
Architecture
STR
ATT
STR 1-354 | ATT 355-511 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage QD01
[NCBI] 		3440539 No lineage information
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XXJ63385.1 [NCBI]
Genbank nucleotide accession
PV785814 [NCBI]
CDS location
range 209628 -> 211166
strand +
CDS
ATGTCAGGAACAAACATATTCACGCACGTTAGTGACGAGGCACAATATGTTTACCTGCAACCGTTCGTATCGCCTGGCGCAGCTTTTGAGTCAGGCGGTGACGTACAGAGTATCTTAGAGCAAATCGACCCAAGTGCGTTAGCTGAATTGCCACCACTCCCTTATGCGACTTCAACTGAGCTAGGGGCGGTTGAATATTCAACTCAAGCCGAGGCAAACGCACTAGACGATCTGCTAACTGTGCTTACACCTGAGACTCTTGACGGGGTTGACCAGTTTGTATCGCCAGCAACGGATACTCAGTTAGGTAACTTACAAGAACTACGCACAATTGATTTGACTCGAACTTATGCATCATCGGACGCAAGTCGCTTGCTATCATATCGTCGATTAGAAGAAATGATGACAGTCAGAAATGCTCTTGACGATGACACAACTGATCAGTCTCGTGGATTTTCGCAATTTGCAACGCTTGCTGAATCACTGTCATATGCGCCAAACCGATTTATTTCACCGATGAGAACGTGGAACTTAATCAAAACTGAGATTCCAAACCCATGGTCTCAAGCCACTGAAGCATTGAAAGGCGTCGTTAGAACAGTAGGTCCCGGTGATGCTAACAAATCAGATGCATCAATCGCAATCAGTGTGAAAGGCTTGAACTACGTATCGGCTGCTAAAGCAAAACGCGGTGCGTTTAAGCTAACTCAAAACAACTATGATAGAAACGCAAGTGATGCCAATGAATACGCAATCACGCCAAACACAATAGACAATTTGTTGGGCACGTCTGACAAACACGGCTTCTTTCAATTACCTGCTACGTACGTGAATGATAGCACGCAAGTAACAAGCGCAGCACTAGGGTATGATTTAGCAGATAAGTTGGGACCGACTGGCGGTACAATCACAGGAACACTTCAGTGTGACAATATCATCAGTAAACTAGTTACTAGACAAAAACAAACGAACTATAACGGGACGTATTATGTCAATGTAACTGAGAACAGAGAAATGTTCCCAAATGATCAGTTAGACGGTAAGATCGGTCTAGCAGGTCGCCCAATAGGCAGTATTTTCCACTGCACTGCAAACGTTGACCCGAATACGTTGTTCGGTGGTGTTTGGTATAGAATCACGGGCGGTCAGACTATGATGGGGCAGGGAACGGGCAATGACGGTCTTCGTAAGCGATTTTTCTCAGCCGGTTCTACTAGAAATGATAGCAGAGTGACACTATCTGAATCACAATTGCCGAAACACAGTCATAAAAGTTGGGGTGAAGCATACACGGGTTCTAAATCACAGTGTATAAAATACGATGAAATTCGCAACCCATACGGCGTGACTTACAAATGTACTCAATATAGCTATGTTGACTACTGGCCATTTGGCTACACCGGTTCAAGAAATAATGTGGGCATGGGTGCTACTGACCATGATAACTACATGTACTACACATCACCAGTCGGTGGGAATCAGGCTCATGAAAATATGATGCCATTCTACGCCGTTTATATTTGGAGACGAGTTAAATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
d08735208b6dd0e407292ae3ab56d76b763891a37ce9d226aaad4f7bd14da48c
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,6267
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete Genome Sequence of Vibrio natriegens Bacteriophage QD01 Zhu,L. and Zhu,D. 2015-12 — GenBank