Protein

View in Explore
Genbank accession
QGF19782.1 [GenBank]
Protein name
tail spike protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,89
Protein sequence
MANVIKTIVTYNLDGSRDFAVPFEYLARKFVKVTLIGQDRKELDITTDFRFSTKTTVTTTRTWGAADGYSLIEIRRFTSVSDRLVDFQDGSILRANDLNLAQIQAIHIAEEARDLTADTIGVNTDGNLDARGRRLVNLVDGVDPQDAVTIKQLREANGSAADVLNILAGTSGFNRVNGFQTIRLSTADAKITSVFKEGQRVYLTDRGLFFKFVPTRHVVGTDPEALLSVEDELHVFVDAGGMLEFDDYETLSFLEAKNYNRYQAEFRNHNPITYVAYGDSITWGLQADSSQAPNNYPASIAAAITRRTTVPFTSVNRGIPSDRALTNYLRYPQGVAGSKISSIMLGVNDVQFATGNGEFWQNIQNNLYSVEHYHIVMRKFVAREILRGNTVVLFGMTQYVSLNKGELGGFSTPYLAQVYEAAIRSIAKEFNVMYVNTRKDIIGNYGISESCYDGLHPKDSFHKIMGNRFAAVFLSVDFKNALEVGVGSIVSANILKSPIVSNRTLVVSEKAGFSSPLGGAENAPAATGVKIPEGATGGSVTVSFYLKDDSAVIFPTINSDTAYSFDMFLNEGDKQPDFDYDGDLLLKDRQFHVSAKSISGSAPKHRLTENYSQVFAGCYFHITSRGWHTITFNAGPNAGNVSYEGLVVTSWESVRSNDVYMGVNGLATKDASGIQVEKNILQCVPQGTGQYNIVTANLNPTTYMVDVEIPQDDILIVPRVIYKHQAGFQVRFKDKDGNGIEPVEFTIKLIGGR
Physico‐chemical
properties
protein length:753 AA
molecular weight: 82912,26710 Da
isoelectric point:5,72541
aromaticity:0,10093
hydropathy:-0,17039

Domains

Domains [InterPro]
IPR005604
ATT
1–130
IPR005604 SSF52266 DC_0735
DC_1263
ATT
1–201
DC_1263 SSF52266
IPR036514
STR
273–474
IPR036514
IPR013830
ENZ
276–463
IPR013830
QGF19782.1
1 753
Architecture
ATT
STR
RBD
ATT 1-201 | STR 265-474 | RBD 475-723 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QGF19782.1
1 753
Domain Start End Length (AA) Confidence
N-terminal 1 254 254 0,9945
Central domain 255 453 200 0,4720
C-terminal 454 753 299 0,5809
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-254
Central
255-453
C-terminal
454-753

Taxonomy

  Name Taxonomy ID Lineage
Phage Pectobacterium phage MA6
[NCBI] 		2608323 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Pectobacterium atrosepticum
[NCBI] 		29471 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QGF19782.1 [NCBI]
Genbank nucleotide accession
MN327636 [NCBI]
CDS location
range 3239 -> 5500
strand -
CDS
ATGGCTAACGTAATTAAGACCATTGTTACTTACAATCTGGATGGCTCAAGAGACTTTGCGGTGCCCTTTGAGTACCTCGCACGGAAGTTCGTGAAGGTCACGCTCATTGGTCAAGACCGTAAAGAGCTGGACATTACGACCGACTTCCGGTTCTCCACAAAGACCACCGTTACGACTACCCGTACTTGGGGTGCCGCTGATGGTTACTCTCTGATTGAGATTCGCCGATTCACGTCTGTAAGTGACCGCTTGGTGGACTTTCAGGATGGGTCAATCCTACGAGCTAATGACCTTAACTTGGCTCAGATTCAGGCTATCCACATTGCTGAAGAAGCCCGTGACTTAACGGCTGATACTATCGGCGTTAACACTGATGGTAACCTAGATGCTCGTGGTCGTCGTTTGGTCAATCTGGTAGATGGTGTTGACCCTCAGGATGCAGTGACCATTAAGCAGCTGCGTGAGGCTAACGGCTCAGCGGCTGACGTCCTGAACATCTTAGCGGGAACCTCAGGGTTCAACCGTGTGAATGGCTTCCAGACTATCCGATTGTCCACGGCAGACGCTAAGATTACCAGTGTGTTCAAAGAAGGCCAACGGGTCTATCTGACTGACCGTGGGTTGTTCTTTAAGTTTGTCCCTACGAGACACGTTGTGGGCACAGACCCTGAAGCTCTCCTGAGTGTTGAGGATGAGTTGCACGTATTCGTTGACGCTGGTGGTATGCTTGAGTTTGACGATTATGAGACCTTAAGTTTCCTTGAGGCTAAGAACTACAACCGTTATCAAGCTGAGTTCCGCAATCATAATCCAATTACCTATGTGGCTTATGGTGACAGCATTACGTGGGGTCTTCAGGCTGACAGCTCTCAGGCACCTAATAATTACCCTGCGTCTATTGCCGCTGCGATTACCAGACGTACCACTGTGCCGTTCACTTCGGTCAACCGTGGGATTCCCTCAGACCGTGCATTGACGAACTACCTACGTTACCCTCAAGGTGTCGCTGGGTCGAAAATCTCATCAATCATGCTGGGAGTGAATGACGTTCAGTTCGCTACAGGTAACGGTGAGTTCTGGCAGAATATTCAGAATAACCTGTACTCAGTTGAGCATTATCACATTGTCATGCGCAAGTTCGTAGCTCGTGAGATTCTTCGTGGTAACACTGTAGTTCTCTTTGGAATGACCCAATACGTCTCGCTTAATAAAGGTGAGCTTGGCGGCTTCTCTACTCCTTACTTAGCGCAGGTCTATGAAGCAGCCATTCGGTCTATCGCTAAGGAGTTCAATGTGATGTACGTTAACACCCGTAAGGACATCATTGGGAACTACGGCATTTCTGAGAGCTGCTACGATGGGCTGCACCCTAAGGACTCCTTCCACAAAATCATGGGTAACCGCTTTGCGGCTGTGTTCCTGAGTGTGGACTTTAAGAACGCCTTAGAGGTTGGGGTTGGTAGTATCGTCTCAGCGAACATCCTGAAGAGTCCTATTGTGTCCAACCGTACCTTAGTGGTTAGTGAGAAGGCTGGCTTCAGTTCACCTTTAGGTGGCGCTGAGAATGCACCAGCAGCAACTGGCGTTAAGATTCCTGAAGGAGCAACTGGAGGGTCTGTGACCGTTTCGTTTTATCTTAAGGATGACTCAGCGGTAATCTTCCCGACTATCAATAGTGACACGGCCTATAGCTTCGATATGTTCCTTAATGAAGGTGATAAGCAGCCGGACTTTGACTACGATGGTGACCTGCTTCTGAAAGACCGTCAGTTCCATGTTAGCGCTAAGTCCATCTCAGGAAGTGCCCCTAAGCACAGGCTTACTGAGAACTACTCTCAGGTGTTTGCAGGATGCTATTTCCACATTACCAGCCGTGGTTGGCACACCATTACGTTCAACGCTGGGCCAAATGCAGGCAATGTATCCTATGAGGGCCTTGTGGTTACCTCTTGGGAATCAGTCCGTAGTAACGATGTGTACATGGGCGTTAATGGTCTGGCTACGAAAGATGCTTCAGGTATCCAAGTAGAGAAGAACATCCTTCAGTGTGTCCCTCAGGGTACTGGTCAATACAACATTGTGACCGCAAACCTCAACCCTACGACCTATATGGTTGACGTTGAGATTCCTCAGGACGACATCTTGATTGTTCCACGTGTTATCTACAAGCACCAAGCAGGGTTCCAAGTCCGATTCAAAGACAAGGATGGCAATGGTATTGAGCCTGTAGAGTTCACCATTAAGTTAATCGGGGGTAGATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
fef37d9eec53611fea9b91a21b2191f6b42861efff154c3ca999bc72a6b077a5
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7443
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Phage-based cocktail containing Podoviridae and Myoviridae bacteriophages inhibit growth of Pectobacterium spp. under in vitro and in vivo conditions Zaczek-Moczydlowska,M.A., Young,G.K., Trudgett,J., Plahe,C., Fleming,C.C., Campbell,K. and OHanlon,R. 2020-04-02 — GenBank