Protein

View in Explore
Genbank accession
XYL02950.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence RBPdetect
Probability 0,88
Protein sequence
MAITGPWVGSSAVAETGKRWGWEQRVAVRLPGAGWYSELIGRSREVVIDLAANNNYNKDNLINWMRQQGNAPVVINVRGNMVSYDATVPLFEFPANLTNEYVQLNIHGVTIFGRGGYGVGGSNGWVFAAQQGGPCIHNWIGGRLRINNGGAIAGGGGGGGGQGWSSSGVAAGGGGGRPFGIYGRSANSSGITAWGTDATISAPGRGSTFESSRRSVTGGTGGDVAAAGNAAYGNFESGERWGPAGGGAAVAGQAPTWQNVGTIYGSRV
Physico‐chemical
properties
protein length:268 AA
molecular weight: 27322,77480 Da
isoelectric point:9,65409
aromaticity:0,09701
hydropathy:-0,21306

Domains

Domains [InterPro]
IPR048291
ATT
1–40
IPR048291 IPR007932
DC_1679
STR
4–207
DC_1679
XYL02950.1
1 268
Architecture
ATT
STR
RBD
ATT 1-40 | STR 41-207 | RBD 208-268
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage vB_SAg-RPN19
[NCBI] 		3452860 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Salmonella enterica subsp. enterica serovar Agona
[NCBI] 		58095 Pseudomonadota > Gammaproteobacteria > Enterobacterales > Enterobacteriaceae > Salmonella > Salmonella enterica

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XYL02950.1 [NCBI]
Genbank nucleotide accession
PV890570.1 [NCBI]
CDS location
range 65335 -> 66141
strand +
CDS
ATGGCTATAACAGGACCGTGGGTTGGAAGTAGTGCAGTAGCTGAAACCGGTAAAAGATGGGGCTGGGAGCAACGCGTAGCAGTTAGATTGCCTGGCGCTGGATGGTATTCTGAACTGATAGGTAGATCAAGAGAAGTTGTTATTGATTTAGCGGCTAACAACAATTACAATAAAGATAACCTCATTAATTGGATGCGTCAACAAGGCAATGCTCCAGTTGTAATTAATGTCCGTGGAAACATGGTTTCATATGATGCAACAGTTCCTCTATTTGAGTTCCCAGCTAATTTAACAAATGAATATGTTCAACTTAATATTCACGGTGTAACAATTTTTGGACGTGGTGGATATGGCGTTGGCGGATCTAATGGCTGGGTATTTGCAGCTCAACAAGGTGGTCCGTGTATCCATAACTGGATTGGCGGTCGCTTAAGAATTAACAATGGCGGTGCTATAGCCGGCGGCGGTGGCGGCGGTGGCGGTCAAGGATGGAGTTCATCTGGAGTTGCAGCCGGCGGTGGTGGCGGACGACCATTTGGTATATATGGACGATCAGCTAACTCTAGCGGTATTACAGCTTGGGGTACAGATGCTACTATTTCAGCTCCAGGAAGAGGTTCTACATTTGAAAGTTCTAGACGTTCAGTTACTGGCGGTACCGGGGGTGACGTTGCTGCTGCGGGTAATGCGGCTTATGGAAACTTTGAATCGGGCGAACGCTGGGGCCCGGCGGGTGGAGGCGCAGCTGTAGCAGGACAAGCACCTACATGGCAAAATGTTGGTACTATATATGGATCTCGAGTATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
cffa791372010e3202f23f79273db59f1048ab7d1ced7257683fada4d301483f
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,9169
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization and Genome analysis of Salmonella phage vB_SAg-RPN19 Imklin,N., Jaipakdee,S. and Nasanit,R. 2022-01-10 — GenBank