Protein

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UniProt accession
A0A140XB77 [UniProt]
Protein name
Pectate lyase family protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,92
Protein sequence
RNITYHHNRYNDVNARLPLQRGGLVHAYNNLYSNVTSSGLNVRQNGQALIESNWFENAVNPVTSRYDGKNFGTWVLKNNNITKPADFSTYSITWTADTKAYVNADSWTSTGTFPTVAYSYSPVSAQCVKDNLASYAGV
Physico‐chemical
properties
protein length:138 AA
molecular weight: 15379,67460 Da
isoelectric point:9,04506
aromaticity:0,13043
hydropathy:-0,53841

Domains

Domains [InterPro]
IPR012334
STR
1–138
IPR012334
IPR002022
ENZ
2–138
IPR002022
IPR011050
STR
2–138
IPR011050
A0A140XB77
1 138
Architecture
STR
STR 1-138
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
A0A140XB77
1 138
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,0040
Central domain 11 127 118 0,7670
C-terminal 128 138 10 0,8514
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-127
C-terminal
128-138

Taxonomy

  Name Taxonomy ID Lineage
Phage Dickeya phage phiDP23.1
[NCBI] 		1542133 Uroviricota > Caudoviricetes > Pantevenvirales > Aglimvirinae >
Host Dickeya sp.
[NCBI] 		1914291 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AIM51732.1 [NCBI]
Genbank nucleotide accession
KM209279 [NCBI]
CDS location
range 1 -> 417
strand -
CDS
GCCGCAACATCACTTATCACCATAACCGCTACAACGACGTTAACGCCCGTCTGCCGTTACAGCGTGGCGGTCTGGTGCACGCCTATAACAACCTGTACAGCAACGTGACCAGCTCCGGCCTGAACGTGCGCCAGAACGGCCAGGCGCTGATCGAAAGCAACTGGTTCGAAAACGCGGTGAACCCGGTGACGTCCCGTTATGACGGCAAGAACTTCGGCACCTGGGTGCTGAAAAACAACAACATCACCAAACCGGCCGACTTCTCTACCTACAGCATCACCTGGACGGCGGACACCAAAGCTTACGTCAACGCGGACAGCTGGACCTCCACCGGGACTTTCCCGACGGTGGCCTACAGCTACAGCCCGGTGAGCGCACAGTGCGTGAAGGACAATCTGGCTAGCTACGCCGGGGTGA

Genome Context

Genome Context

Gene Ontology

Description Category Evidence (source)
GO:0044423 virion component Cellular Component IEA:UniProtKB-KW (UniProt)
GO:0016829 lyase activity Molecular Function IEA:UniProtKB-KW (UniProt)
GO:0051701 biological process involved in interaction with host Biological Process IEA:UniProtKB-ARBA (UniProt)
GO:0019058 viral life cycle Biological Process IEA:UniProtKB-ARBA (UniProt)

Tertiary structure

PDB ID
5fcf4c2dafec65b6e27186b0c9f6c51725af13cc2f07366da7ca0309cbf6f01e
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7274
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50