Protein

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Genbank accession
AMM43793.1 [GenBank]
Protein name
structural protein
RBP type
TSP
Evidence RBPdetect
Probability 0,89
Protein sequence
MTISFNNGSGSSCNNCSGIKSLVINNAGHLIVTYDDNTIEDLGLVVGHDGANGTNFYPNEVGFDIPDASFRLDKDIGWSYLSLTVNSTQTVPTLYFKTNAANEPTATWVGAPFSKGEKGEMGSPFHIDSQGTTKPTTGLFDNYTFLDTSTGEIFVYDLDTTSWSAPYQWRGPQGLQGQFIINSQGDQFPPIANLNLGYTFYNTDTGYLFYVQEVQNGPVTQKVWSDGILFRGPKGEDGDKGDKGEPGEDSNNIYAIKNVIDTSYENALLVIGNVPAGYLVTRIEIDIRNPYDIDVNELSVRFGGTAQSEIDGTIIAPPDYFDINRVQRYIVDEVNHEISDKEEILSCIFNESVNNSSVGLMTIICTIAKQLPITPIEDNI
Physico‐chemical
properties
protein length:380 AA
molecular weight: 41669,53730 Da
isoelectric point:4,21264
aromaticity:0,10526
hydropathy:-0,29842

Domains

Domains [InterPro]
DC_0488
STR
5–368
DC_0488
AMM43793.1
1 380
Architecture
STR
STR 5-368 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AMM43793.1
1 380
Domain Start End Length (AA) Confidence
N-terminal 1 376 376 0,8491
Central domain 377 376 1 0,0159
C-terminal 377 380 3 0,9298
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-376
Central
377-376
C-terminal
377-380

Taxonomy

  Name Taxonomy ID Lineage
Phage Pectobacterium phage vB_PcaM_CBB
[NCBI] 		2772511 Uroviricota > Caudoviricetes > Mimasvirus >
Host Pectobacterium carotovorum subsp. carotovorum
[NCBI] 		555 Bacteria > Proteobacteria > Gammaproteobacteria > Enterobacteriales > Enterobacteriaceae > Pectobacterium

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AMM43793.1 [NCBI]
Genbank nucleotide accession
KU574722 [NCBI]
CDS location
range 139024 -> 140166
strand -
CDS
ATGACAATTTCATTTAATAATGGTTCGGGATCTTCATGTAATAATTGTTCTGGTATTAAGAGTTTAGTGATCAATAATGCTGGTCATTTGATTGTTACATACGATGATAATACCATTGAAGATCTTGGTCTAGTCGTTGGTCACGATGGTGCAAATGGTACTAATTTTTATCCAAATGAAGTAGGTTTTGATATTCCAGATGCTTCTTTCAGATTAGATAAAGATATTGGCTGGTCTTACCTTAGCCTAACTGTCAATTCTACACAAACCGTACCGACACTTTATTTTAAAACTAATGCTGCTAATGAACCAACAGCAACTTGGGTAGGTGCACCATTTAGTAAGGGTGAAAAAGGTGAAATGGGTTCTCCATTCCACATTGACTCACAAGGAACTACTAAACCTACAACTGGTCTTTTTGATAACTATACCTTCTTAGATACTAGTACTGGTGAAATTTTTGTTTATGATTTAGATACAACCTCATGGTCGGCTCCATATCAATGGCGTGGTCCACAAGGTTTACAAGGTCAGTTTATCATTAATTCACAAGGTGATCAATTCCCACCAATCGCTAATTTGAATCTTGGATATACTTTTTACAACACTGATACTGGATATTTGTTCTATGTACAGGAAGTTCAAAATGGTCCAGTTACCCAAAAAGTTTGGAGCGACGGTATTCTATTCCGTGGTCCAAAAGGTGAAGATGGTGACAAGGGTGATAAAGGTGAACCAGGTGAAGATTCTAACAACATCTATGCAATCAAAAATGTAATTGATACTTCATATGAGAATGCTCTATTAGTAATTGGTAATGTTCCTGCTGGATATTTGGTAACACGAATTGAGATCGACATTCGAAACCCATACGATATAGATGTTAACGAATTATCGGTACGTTTTGGTGGTACTGCACAATCAGAAATTGATGGTACTATCATTGCTCCACCTGATTATTTTGATATTAACCGTGTACAACGTTACATTGTTGATGAAGTCAATCATGAAATTAGTGATAAAGAAGAAATTTTATCATGTATCTTTAATGAATCAGTGAACAATAGCTCTGTTGGTCTAATGACTATTATCTGTACTATTGCAAAACAACTTCCGATTACACCAATCGAAGACAATATCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
52391ba525b421025a1b35a45b5f7ed2fbd45343b424dba28c1365681be561ad
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7325
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50